Contig 000480:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039J11Sequence594000480 (5)dbj|BAQ15377.1|2e-136cryptochrome 1 [Ipomoea nil]681006767 (7)dbj|BAQ15377.1|8e-55cryptochrome 1 [Ipomoea nil]
JMFF045M01Sequence605000480 (5)dbj|BAN14730.1|1e-141cryptochrome 1, partial [Lotus japonicus]587006767 (7)dbj|BAF95170.1|3e-14cryptochrome 1 [Ipomoea nil]
JMFS106E02Sequence343000480 (5)dbj|BAQ15377.1|1e-57cryptochrome 1 [Ipomoea nil]
JMFS137G08Sequence195000480 (5)gb|AJA72482.1|1e-34cryptochrome 1, partial [Ipomoea purpurea]
JMSF031N11Sequence640000480 (5)gb|AEA50861.1|7e-138cry1-2 [Populus tremula]767016133ref|XP_006364857.1|6e-32PREDICTED: cryptochrome-1-like isoform X1 [Solanum tuberosum] ref|XP_006364858.1

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF031N11+ TTN
                      ____________________________________________________________
consensus TTN
 
. : . : . : . : . : . :
JMSF031N11+ TTCCATACCGTTNTCAATTGCAGCTCTCGAGGCGGCTTCACGCTGTGCCATATGAACAAG
                      ____________________________________________________________
consensus TTCCATACCGTTNTCAATTGCAGCTCTCGAGGCGGCTTCACGCTGTGCCATATGAACAAG
 
. : . : . : . : . : . :
JMSF031N11+ GGCTGCTTGCAATCTTACCTTTGNTGCATCGATTTCAACAACCGGAAGAGGATAGTTGGA
JMFF045M01+ AGAGGATAGTTGGA
                      ____________________________________________________________
consensus GGCTGCTTGCAATCTTACCTTTGNTGCATCGATTTCAACAACCGGAAGAGGATAGTTGGA
 
. : . : . : . : . : . :
JMSF031N11+ ACCTAGTTCAATTCCAGCTGCTTGGAGAACCGACTCGGGTGCATTCCAAGGATGGTGTAT
JMFF045M01+ TCCTAGCTCAATCCCAGCTGCTTGCAGAACAGATTCCGGGGCGTTCCAGGGATGGTGAAT
                      ____________________________________________________________
consensus TCCTAGTTCAATTCCAGCTGCTTGGAGAACCGATTCGGGTGCGTTCCAGGGATGGTGTAT
 
. : . : . : . : . : . :
JMSF031N11+ CCATTCGGTAGGAAGTCGAGCAAGCTCGGGAAGCCAACGGCGTACATACTCCCCATTCGG
JMFF045M01+ CCACTCGGTTGGAAGCCGAACAAGTTCAGGAAGCCACCGACGTACATACTCCCCATTCGG
                      ____________________________________________________________
consensus CCATTCGGTTGGAAGTCGAGCAAGTTCGGGAAGCCACCGGCGTACATACTCCCCATTCGG
 
. : . : . : . : . : . :
JMSF031N11+ GTCAAATTTGTAGCCCTCAAACTGTGGATTATCAATTCGATCAAATTCACGGGCATCTGG
JMFF045M01+ GTCACATTTGTAACCTTCAAACTGTGGATTATCAATGCGGTCTAATTCGCGGCCATCGGG
JMFF039J11+ AATTCGCGGCCATCGGG
                      ____________________________________________________________
consensus GTCACATTTGTAGCCTTCAAACTGTGGATTATCAATTCGGTCTAATTCGCGGCCATCGGG
 
. : . : . : . : . : . :
JMSF031N11+ TAGGGTACCAGTGATGTATTGCCAACCAAGAGCATCGCTCTCGAGATCTGCATCTAACAG
JMFF045M01+ TATGGTGCCAGAGATGTATTGCCAACCGAGAGCATCACTCTCGAGATCTGCATCTAATAG
JMFF039J11+ TATGGTGCCAGAGATGTATTGCCAACCGAGAGCATCACTCTCGAGATCTGCATCTAATAG
                      ____________________________________________________________
consensus TATGGTGCCAGAGATGTATTGCCAACCGAGAGCATCACTCTCGAGATCTGCATCTAATAG
 
. : . : . : . : . : . :
JMSF031N11+ AGTATCCCAAAAGTACTTCATTCCCCATCTCCAAGAAAGCTGAAGAACCTTAACGAAGAA
JMFF045M01+ AGTATCCCAAAAGTACTTCACTCCCCATCTCCATGGAAGCTGCAAAACTTTGACAAAGAA
JMFF039J11+ AGTATCCCAAAAGTACTTCACTCCCCATCTCCATGGAAGCTGCAAAACTTTGACAAAGAA
                      ____________________________________________________________
consensus AGTATCCCAAAAGTACTTCACTCCCCATCTCCATGGAAGCTGCAAAACTTTGACAAAGAA
 
. : . : . : . : . : . :
JMSF031N11+ ACTCGACACTACAACTCGTATCCGGTCATGTAACCATCCAGTAGCCCAGAGTTCTCTCAT
JMFF045M01+ ACTAGAAACTACAACGCGTATCCTATCATGTAGCCAGCCGGTTGCCCAGAGCTCTCTCAT
JMFF039J11+ ACTAGAAACTACAACGCGTATCCTATCATGTAGCCAGCCGGTTGCCCAGAGCTCTCTCAT
                      ____________________________________________________________
consensus ACTAGAAACTACAACGCGTATCCTATCATGTAGCCAGCCGGTTGCCCAGAGCTCTCTCAT
 
. : . : . : . : . : . :
JMSF031N11+ GCCCGCATCCACCAAAGGATAACCCGTTCTGCCTTGCCTCCACGCCTTAAAATAGCCCTC
JMFF045M01+ ACCAGCATCCACGAGAGGGTAACCAGTTCTGCCTTGCCTCCACGCCTTAAAGTAGCCCTC
JMFF039J11+ ACCAGCATCCACGAGAGGGTAACCAGTTCTGCCTTGCCTCCACGCCTTAAAGTAGCCCTC
                      ____________________________________________________________
consensus ACCAGCATCCACGAGAGGGTAACCAGTTCTGCCTTGCCTCCACGCCTTAAAGTAGCCCTC
 
. : . : . : . : . : . :
JMSF031N11+ ATCTACTACCCAAGGAAAGTGCTTTAGATGACCAAGAAGGGGCCTTTCATGGCTGTAAGG
JMFF045M01+ GTTAATTACCCATGGGAAGTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGCTGTATGG
JMFS137G08+ GTACTTTAGATGACCAAGCAGAGGCCTTTCGTGGCTGTATGA
JMFF039J11+ GTTAATTACCCATGGGAAGTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGCTGTATGG
JMFS106E02+ GTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGGTGTATGG
                      ____________________________________________________________
consensus GTTAATTACCCATGGGAAGTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGCTGTATGG
 
. : . : . : . : . : . :
JMSF031N11+ ATGATTGAAACTCATATATCTTGAATACTCTC
JMFF045M01+ ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
JMFS137G08+ ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
JMFF039J11+ ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
JMFS106E02+ ATGGTTAAAGCTCATATATCTCGAACACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
                      ____________________________________________________________
consensus ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
 
. : . : . : . : . : . :
JMFF045M01+ CACACTCTCTTCGC
JMFS137G08+ CACACTCTATTCGCCTGCTATGTTCCCTTCGTTGGCCCAGAGAACTTGCTTCATTCGAAC
JMFF039J11+ CACACTCTCTTCGCCTGCTATGTTCCCTTCGTTGGCCCAGAGAACTTGCTTCATTCGAAC
JMFS106E02+ CACACTCTCTTCGCGTGATATGTTCCCTTCGTGGGCACAGAGAACGTGTTTCATTCGAAC
                      ____________________________________________________________
consensus CACACTCTCTTCGCCTGCTATGTTCCCTTCGTTGGCCCAGAGAACTTGCTTCATTCGAAC
 
. : . : . : . : . : . :
JMFS137G08+ CAGATGGAATGCTTTCCGAACGCTTACTTCCCC
JMFF039J11+ CAGATGGAATGCTTTCCGAACGCTTACTTCCCCAAAGTGTAAATGCGGGGAAAGAAATGA
JMFS106E02+ CAGATGGAATGCTTTCCGAACGCTTACTTCCCCAAAGTGTAAATGCGGGGAAAAAAATGA
                      ____________________________________________________________
consensus CAGATGGAATGCTTTCCGAACGCTTACTTCCCCAAAGTGTAAATGCGGGGAAAGAAATGA
 
. : . : . : . : . : . :
JMFF039J11+ GGTTGTTGCACTATCAGCCTTTCTTCGGTTCTGTGAGTACTCAATCAATGGCCCGTTTAT
JMFS106E02+ GGGTGTTGCACTAACAGCCTTTCTGGGGTTGTGTGAGTACTCAATCAATGGCCCGTATAT
                      ____________________________________________________________
consensus GGTTGTTGCACTATCAGCCTTTCTTGGGTTGTGTGAGTACTCAATCAATGGCCCGTTTAT
 
. : . : . : . : . : . :
JMFF039J11+ AAAAGCTGTTAATGCCTTAT
JMFS106E02+ AAAAGCTGTAAATGCCTTATGAGCATTCCTCCAAACAGGGGACCATGCCCGAGCAAAAAG
                      ____________________________________________________________
consensus AAAAGCTGTTAATGCCTTATGAGCATTCCTCCAAACAGGGGACCATGCCCGAGCAAAAAG