Contig 000462:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS094A05Sequence627000462 (3)sp|Q2Z2E9.1|SCR_IPONI2e-40RecName: Full=Protein SCARECROW; Short=PnSCR [Ipomoea nil] dbj|BAE48702.1| SCARE
JMSF029N18Sequence395000462 (3)sp|Q2Z2E9.1|SCR_IPONI9e-42RecName: Full=Protein SCARECROW; Short=PnSCR [Ipomoea nil] dbj|BAE48702.1| SCARE661007177 (2)sp|Q2Z2E9.1|SCR_IPONI4e-129RecName: Full=Protein SCARECROW; Short=PnSCR [Ipomoea nil] dbj|BAE48702.1| SCARE
JMSF036G14Sequence636000462 (3)sp|Q2Z2E9.1|SCR_IPONI5e-65RecName: Full=Protein SCARECROW; Short=PnSCR [Ipomoea nil] dbj|BAE48702.1| SCARE704007177 (2)sp|Q2Z2E9.1|SCR_IPONI1e-129RecName: Full=Protein SCARECROW; Short=PnSCR [Ipomoea nil] dbj|BAE48702.1| SCARE

Alignment

This contig is upended


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JMSF036G14+                                  GGGAGNGGNNCNGNNNGCAGNGNGGNNCNGGNGGNGT
                      ____________________________________________________________
consensus                                    GGGAGNGGNNCNGNNNGCAGNGNGGNNCNGGNGGNGT
 
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JMSF036G14+           TTNTAGNTNNGGAAGGAGCCGGGAAGAGAGGAAGNCCGGAGAAAACACAGAGCGGAAGAG
                      ____________________________________________________________
consensus             TTNTAGNTNNGGAAGGAGCCGGGAAGAGAGGAAGNCCGGAGAAAACACAGAGCGGAAGAG
 
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JMSF036G14+           GCGGNTGCGGTTCATTNGGCGGTAANTGNTCCATGTAAGCCAAGTGTGTGGCGTCGGACG
                      ____________________________________________________________
consensus             GCGGNTGCGGTTCATTNGGCGGTAANTGNTCCATGTAAGCCAAGTGTGTGGCGTCGGACG
 
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JMSF036G14+           TTGACGTCACGCTCAAATTGGTGGAGGTGGGCGGTGGCGCTATNTGCATAGTGGAGTAGT
                      ____________________________________________________________
consensus             TTGACGTCACGCTCAAATTGGTGGAGGTGGGCGGTGGCGCTATNTGCATAGTGGAGTAGT
 
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JMSF036G14+           TGTTGANGACGACGTGGTTCGGATGACTCACACTCACACTCAAACTATTCCCCCCACCAT
JMSF029N18+                                            TCACACTCAAACTATTCCCCCCACCAT
                      ____________________________________________________________
consensus             TGTTGANGACGACGTGGTTCGGATGACTCACACTCACACTCAAACTATTCCCCCCACCAT
 
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JMSF036G14+           TATCACCCCCGGCGCCGCCGCCAAAATTAGTCCCGCAAACCCTCAAATCCCCCAGAAGCG
JMSF029N18+           TATCACCCCCGGCGCCGCCGCCAAAATTAGTCCCGCAAACCCTCAAATCCCCCAGAAGCG
JMFS094A05+                                            CGCAAACCCTCAAATCCCCCAGAAGCG
                      ____________________________________________________________
consensus             TATCACCCCCGGCGCCGCCGCCAAAATTAGTCCCGCAAACCCTCAAATCCCCCAGAAGCG
 
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JMSF036G14+           GCGCGTTCCGCCGCAGAAACCTGCCGTGCTCGCTGATTCCCCCGCCGATCTGCAGCTCCA
JMSF029N18+           GCGCGTTCCGCCGCAGAAACCTGCCGTGCTCGCTGATTCCCCCGCCGATCTGCAGCTCCA
JMFS094A05+           GCGCGTTCCGCCGCAGAAACCTGCCGTGCTCGCTGATTCCCCCGCCGATCTGCAGCTCCA
                      ____________________________________________________________
consensus             GCGCGTTCCGCCGCAGAAACCTGCCGTGCTCGCTGATTCCCCCGCCGATCTGCAGCTCCA
 
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JMSF036G14+           TCTCCGACGCCGCCCTCTTCCTAACCATCTTGGCGTTATCGCAAAGCAGCGCCAGATGAG
JMSF029N18+           TCTCCGACGCCGCCCTCTTCCTAACCATCTTGGCGTTATCGCAAAGCAGCGCCAGATGAG
JMFS094A05+           TCTCCGACGCCGCCCTCTTCCTAACCATCTTGGCGTTATCGCAAAGCAGCGCCAGATGAG
                      ____________________________________________________________
consensus             TCTCCGACGCCGCCCTCTTCCTAACCATCTTGGCGTTATCGCAAAGCAGCGCCAGATGAG
 
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JMSF036G14+           AAGAAGGAGAAGCCGAAGAAGAAGAAGAATGCAAAGGAAGGATATTGTGGTGGCTGTCGT
JMSF029N18+           AAGAAGGAGAAGCCGAAGAAGAAGAAGAATGCAAAGGAAGGATATTGTGGTGGCTGTCGT
JMFS094A05+           AAGAAGGAGAAGCCGAAGAAGAAGAAGAATGCAAAGGAAGGATATTGTGGTGGCTGTCGT
                      ____________________________________________________________
consensus             AAGAAGGAGAAGCCGAAGAAGAAGAAGAATGCAAAGGAAGGATATTGTGGTGGCTGTCGT
 
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JMSF036G14+           TCAGGTGATACTCCCTACTACTGGTGGCGCCTCCGCTCACATTCGCCGCGTCGCCAACCA
JMSF029N18+           TCAGGTGATACTCCCTACTACTGGTGGCGCCTCCGCTCACATTCGCCGCGTCGCCAACCA
JMFS094A05+           TCAGGTGATACTCCCTACTACTGGTGGCGCCTCCGCTCACATTCGCCGCGTCGCCAACCA
                      ____________________________________________________________
consensus             TCAGGTGATACTCCCTACTACTGGTGGCGCCTCCGCTCACATTCGCCGCGTCGCCAACCA
 
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JMSF036G14+           TCGGAAATGCCTTCGCGGCCATCAACACCTTATATTCACCCACCCAGGATTGATTCTC  
JMSF029N18+           TCGGAAATGCCTTCGCGGCCATCAACACCTTATATTCACCCACCCAGGATTGATTCTC  
JMFS094A05+           TCGGAAATGCCTTCGCGGCCATCAACACCTTATATTCACCCACCCAGGATTGATTCTCAA
                      ____________________________________________________________
consensus             TCGGAAATGCCTTCGCGGCCATCAACACCTTATATTCACCCACCCAGGATTGATTCTCAA
 
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JMFS094A05+           TCTCTCGCGATTGTCTTCGCTCTTAAATATTGAAAAACAAAACTCATCAACAATTTCTTA
                      ____________________________________________________________
consensus             TCTCTCGCGATTGTCTTCGCTCTTAAATATTGAAAAACAAAACTCATCAACAATTTCTTA
 
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JMFS094A05+           ATTATTTTCACACCCCAAAAAAAATGCTATTTATATATAAAATTTAATTATTAAAATACT
                      ____________________________________________________________
consensus             ATTATTTTCACACCCCAAAAAAAATGCTATTTATATATAAAATTTAATTATTAAAATACT
 
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JMFS094A05+           AACTAAGATCTCATATATTTGGCAGCCTACTGAAGCACACTCAATTAGGAGAGTCACTTC
                      ____________________________________________________________
consensus             AACTAAGATCTCATATATTTGGCAGCCTACTGAAGCACACTCAATTAGGAGAGTCACTTC
 
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JMFS094A05+           ATGCCATTAGACCACATGTATTTGTTTTGTTTAAAATTTAAGAAATGATATGGGTTAATA
                      ____________________________________________________________
consensus             ATGCCATTAGACCACATGTATTTGTTTTGTTTAAAATTTAAGAAATGATATGGGTTAATA
 
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JMFS094A05+           ACACATTTTGGGGAGATAATAATAACAATTGATAGATATATAAATGGGAAATGATATTGT
                      ____________________________________________________________
consensus             ACACATTTTGGGGAGATAATAATAACAATTGATAGATATATAAATGGGAAATGATATTGT