| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS046A09 | Sequence | 421 | 000417 (3) | ref|XP_004250927.1| | 8e-14 | PREDICTED: phospholipase A1-Igamma3, chloroplastic [Solanum lycopersicum] | |||||
| JMSF026J24 | Sequence | 622 | 002491 (2) | gb|KJB35773.1| | 8e-52 | hypothetical protein B456_006G127600 [Gossypium raimondii] | 719 | 000417 (3) | emb|CDP09265.1| | 2e-80 | unnamed protein product [Coffea canephora] |
| JMSF052J23 | Sequence | 651 | 002491 (2) | ref|XP_011080360.1| | 6e-57 | PREDICTED: phospholipase A1-Igamma3, chloroplastic [Sesamum indicum] | 907 | 000417 (3) | emb|CDP09265.1| | 3e-125 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF052J23+ CAAGAAAGACACTGACTGCAACTTCTGCTCATATTCCGCCCGGGAACA
____________________________________________________________
consensus CAAGAAAGACACTGACTGCAACTTCTGCTCATATTCCGCCCGGGAACA
. : . : . : . : . : . :
rJMSF052J23+ GCTCTTGGCCGAGGTCAACCGTTTAATCGAGAGATACAAAGGGGAGAATCTAAGCATCAC
____________________________________________________________
consensus GCTCTTGGCCGAGGTCAACCGTTTAATCGAGAGATACAAAGGGGAGAATCTAAGCATCAC
. : . : . : . : . : . :
rJMSF052J23+ TGTTACAGGGCACAGCCTCGGAGCGGCCTTGGCTCTGTTAAGCGCATACGACATTGCAGA
____________________________________________________________
consensus TGTTACAGGGCACAGCCTCGGAGCGGCCTTGGCTCTGTTAAGCGCATACGACATTGCAGA
. : . : . : . : . : . :
rJMSF052J23+ AATGAAAGTTAACGTTGTACAGGAAGGCGAAGGCGAGTCTTCTTCTACATCAGCAGCGAC
____________________________________________________________
consensus AATGAAAGTTAACGTTGTACAGGAAGGCGAAGGCGAGTCTTCTTCTACATCAGCAGCGAC
. : . : . : . : . : . :
rJMSF052J23+ TAAGATTCCGGTTTCTGTTTTCTCCTTCGCCGGTCCCAGAGTGGGCAACCTTAGATTTAA
____________________________________________________________
consensus TAAGATTCCGGTTTCTGTTTTCTCCTTCGCCGGTCCCAGAGTGGGCAACCTTAGATTTAA
. : . : . : . : . : . :
rJMSF052J23+ AGAAAGGTGTGACGAGCTCGGGATTAAGGTTCTGAGAATCGTTAATGTTCGCGACAAGGT
rJMSF026J24+ GTGACGAGCTCGGGATTAAGGTTCTGAGAATCGTTAATGTTCGCGACAAGGT
____________________________________________________________
consensus AGAAAGGTGTGACGAGCTCGGGATTAAGGTTCTGAGAATCGTTAATGTTCGCGACAAGGT
. : . : . : . : . : . :
rJMSF052J23+ TCCGACCGTGCCCGGGATTATCGCCAACGAGAAATTCCAATACCAAAAGCAACTGGAAAC
rJMSF026J24+ TCCGACCGTGCCNGGGATTATCGCCAACGAGAAATTCCAATACCAAAAGCAACTGGAAAC
____________________________________________________________
consensus TCCGACCGTGCCCGGGATTATCGCCAACGAGAAATTCCAATACCAAAAGCAACTGGAAAC
. : . : . : . : . : . :
rJMSF052J23+ CACGCTAAAGAATTTCCCATGGAGCTATGCGCATGTGGGAGTGGAATTAGCGCTTGACCA
rJMSF026J24+ CACGCTAAAGAATTTCCCATGGAGCTATGCGCATGTGGGAGTGGAATTAGCGCTTGACCA
____________________________________________________________
consensus CACGCTAAAGAATTTCCCATGGAGCTATGCGCATGTGGGAGTGGAATTAGCGCTTGACCA
. : . : . : . : . : . :
rJMSF052J23+ CTCCTATTCTCCGTTTCTAAAGACAGGCACAGATCTCGGCTGCGCCCATAACCTGGAAGG
rJMSF026J24+ CTCCTATTCTCCGTTTCTAAAGACAGGCACAGATCTCGGCTGCGCCCATAACCTGGAAGG
____________________________________________________________
consensus CTCCTATTCTCCGTTTCTAAAGACAGGCACAGATCTCGGCTGCGCCCATAACCTGGAAGG
. : . : . : . : . : . :
rJMSF052J23+ ACACCTGCACCTCGTAGACGGGTACCACGGCGACGGCCGCCGGTTCCGCTCGGCGACAGG
rJMSF026J24+ ACACCTGCACCTCGTAGACGGGTACCACGGCGACGGCCGCCGGTTCCGCTCGGCGACAGG
____________________________________________________________
consensus ACACCTGCACCTCGTAGACGGGTACCACGGCGACGGCCGCCGGTTCCGCTCGGCGACAGG
. : . : . : . : . : . :
rJMSF052J23+ ACGGGATATTGCGCTGGTGAACAAAGACTCCAACTTCTTGAAGCGGGAGCACGGCGTGCC
rJMSF026J24+ ACGGGATATTGCGNTGGTGAACAAAGACTCCAACTTCTTGAAGCGGGAGCACGGCGTGCC
JMFS046A09- C
____________________________________________________________
consensus ACGGGATATTGCGCTGGTGAACAAAGACTCCAACTTCTTGAAGCGGGAGCACGGCGTGCC
. : . : . : . : . : . :
rJMSF052J23+ GCCGCGGTGGAGGCAGGATGAGAATAAAGGGATGGTGAGGACCAGTGACGGCCGGTGGGT
rJMSF026J24+ GCCGCGGTGGAGGCAGGATGAGAATAAAGGGATGGTGAGGACCAGTGACGGCCGGTGGGT
JMFS046A09- GCCGCGGTGGATGCAGGATGAGAATAAAGGGATGGTGAGGACCAGTGACAGCCAGTGGAT
____________________________________________________________
consensus GCCGCGGTGGAGGCAGGATGAGAATAAAGGGATGGTGAGGACCAGTGACGGCCGGTGGGT
. : . : . : . : . : . :
rJMSF052J23+ GGTGCCGGAGCGCTCCAGGATCGAGGCACATCCGCCGGACACCGGCCATCACTTCCGCAA
rJMSF026J24+ GGTGCCGGAGCGNTCCAGGATCGAGGCACATCCGCCGGACACCGGCCATCACTTCCGCAA
JMFS046A09- GGTACCGGAGCGCTCCAGGATCGAGGCACATCCGCCGGACACCGGCCATCACTTCCGCAA
____________________________________________________________
consensus GGTGCCGGAGCGCTCCAGGATCGAGGCACATCCGCCGGACACCGGCCATCACTTCCGCAA
. : . : . : . : . : . :
rJMSF052J23+ GGTTCTCCGCCTTGC-TCGGGCTAGATTAGAGTTATTCGAGAAGAGAGTGCAAGCGGTTA
rJMSF026J24+ GGTTCTCCGCCTTGC-TCGGGCTAGATTAGAGTTATTCGAGAAGAGAGTGCAAGCGGTTA
JMFS046A09- GGTTATCCGCCTTGCATCGAGCTAGATTAAAGTTATTCAAGAAGAGAGTGCAAGCGGTTA
____________________________________________________________
consensus GGTTCTCCGCCTTGC-TCGGGCTAGATTAGAGTTATTCGAGAAGAGAGTGCAAGCGGTTA
. : . : . : . : . : . :
rJMSF052J23+ AGCAATAATATAATGCGCTCATGACTTTAACTCAATGATTTAGTAGACAGTATTTAGAAA
rJMSF026J24+ AGCAATAATATAATGCGCTCATGACTTTAACTCAATGATTTAGTAGACAGTATTTAGAAA
JMFS046A09- AGCAATAATATAATGCGCTCATGACTTTAACTCAATGATTTAGTAGACAATATTTAGAAA
____________________________________________________________
consensus AGCAATAATATAATGCGCTCATGACTTTAACTCAATGATTTAGTAGACAGTATTTAGAAA
. : . : . : . : . : . :
rJMSF052J23+ CAGAGATCAATAT
rJMSF026J24+ CAGAGATCAATATTCGAACTTTGATGTTCGCATGTGTGAGATTATGTTCAAAGTGGACAG
JMFS046A09- CAGAGATCAATATTCGAACTTTGATGTTCGCATGTGTGAGATTATGTTCAAAGTGGACAG
____________________________________________________________
consensus CAGAGATCAATATTCGAACTTTGATGTTCGCATGTGTGAGATTATGTTCAAAGTGGACAG
. : . : . : . : . : . :
rJMSF026J24+ ATCCCTTATACCCATTGGTATTACATCATTTTAAATGTTTNGTCGGCTAGGTATAGGGCC
JMFS046A09- ATCCCTTATACCCATTGGTATTACATNATTTTAAATGTTTTGTCGGCTAGGTATAGGGCC
____________________________________________________________
consensus ATCCCTTATACCCATTGGTATTACATCATTTTAAATGTTTTGTCGGCTAGGTATAGGGCC
. : . : . : . : . : . :
rJMSF026J24+ ATTAGGTT
JMFS046A09- ATTAGGTTTGGGGATTCAACATTTAAGGAAAAGAATAATATAATTATTATTTCTCCTACC
____________________________________________________________
consensus ATTAGGTTTGGGGATTCAACATTTAAGGAAAAGAATAATATAATTATTATTTCTCCTACC