Contig 000392:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS021E03Sequence557000392 (5)emb|CDP03695.1|2e-44unnamed protein product [Coffea canephora]
JMSF030C07Sequence650000392 (5)ref|XP_009784879.1|1e-61PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nicotiana sylvestris] 748000392 (5)emb|CDP03695.1|5e-67unnamed protein product [Coffea canephora]
JMSF031C07Sequence642000392 (5)ref|XP_009784879.1|4e-59PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nicotiana sylvestris] 705000392 (5)ref|XP_011079992.1|4e-58PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Sesamum ind

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF031C07- GGGGACTTTGCCC
JMSF030C07- GGGGACTTTGCCC
                      ____________________________________________________________
consensus GGGGACTTTGCCC
 
. : . : . : . : . : . :
JMSF031C07- CTCAAAAAGACAAACATAATCAGTTCAAGCTACGGAAGCCACCAACCTTCACAGGTCGCT
JMSF030C07- CTCAAAAAGACAAACATAATCAGTTCAAGCTACGGAAGCCACCAACCTTCACAGGTCGCT
                      ____________________________________________________________
consensus CTCAAAAAGACAAACATAATCAGTTCAAGCTACGGAAGCCACCAACCTTCACAGGTCGCT
 
. : . : . : . : . : . :
JMSF031C07- GATTCACGCCAGACAAACATAATCAGTTCAAGCTACAGACCTTCATCGATTTTTTGTCGA
JMSF030C07- GATTCACGCCAGACAAACATAATCAGTTCAAGCTACAGACCTTCATCGATTTTTTGTCGA
                      ____________________________________________________________
consensus GATTCACGCCAGACAAACATAATCAGTTCAAGCTACAGACCTTCATCGATTTTTTGTCGA
 
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JMSF031C07- TTCACGCGAGAAGGCCCGTCGCCATCATTCTGCTATTGCTGGCTCACCGGCGTCGCCGAC
JMSF030C07- TTCACGCGAGAAGGCCCGTCGCCATCATTCTGCTATTGCTGGCTCACCGGCGTCGCCGAC
                      ____________________________________________________________
consensus TTCACGCGAGAAGGCCCGTCGCCATCATTCTGCTATTGCTGGCTCACCGGCGTCGCCGAC
 
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JMSF031C07- AGTTTGCCTTTGCGACGCAGCTCCACTGCTCCAGGTTGAACTTCTCACTGATTAGAGTGG
JMSF030C07- AGTTTGCCTTTGCGACGCAGCTCCACTGCTCCAGGTTGAACTTCTCACTGATTAGAGTGG
                      ____________________________________________________________
consensus AGTTTGCCTTTGCGACGCAGCTCCACTGCTCCAGGTTGAACTTCTCACTGATTAGAGTGG
 
. : . : . : . : . : . :
JMSF031C07- ATAAGTAATGTTCTATCTGAGCGAAATTGAGCACACTTTGAGATTACCTCCCCATCTCCT
JMSF030C07- ATAAGTAATGTTCTATCTGAGCGAAATTGAGCACACTTTGAGATTACCTCCCCATCTCCT
                      ____________________________________________________________
consensus ATAAGTAATGTTCTATCTGAGCGAAATTGAGCACACTTTGAGATTACCTCCCCATCTCCT
 
. : . : . : . : . : . :
JMSF031C07- CAATCTTCCACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
JMSF030C07- CAATCTTCCACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
rJMSF031C07+ AGACAAGGT
rJMSF030C07+ CACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
                      ____________________________________________________________
consensus CAATCTTCCACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
 
. : . : . : . : . : . :
JMSF031C07- TATTGCACAATTAGGGCTTT-GTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
JMSF030C07- TATTGCACAATTAGGGCTTT-GTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
rJMSF031C07+ TATTGCACAATTAGGGCTTTGGTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
rJMSF030C07+ TATTGCACAATTAGGGC-TTNGTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
                      ____________________________________________________________
consensus TATTGCACAATTAGGGCTTTGGTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
 
. : . : . : . : . : . :
JMSF031C07- TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
JMSF030C07- TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
rJMSF031C07+ TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
rJMSF030C07+ TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
                      ____________________________________________________________
consensus TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
 
. : . : . : . : . : . :
JMSF031C07- GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
JMSF030C07- GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
rJMSF031C07+ GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
rJMSF030C07+ GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
                      ____________________________________________________________
consensus GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
 
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JMSF031C07- GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
JMSF030C07- GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
rJMSF031C07+ GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
rJMSF030C07+ GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
                      ____________________________________________________________
consensus GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
 
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JMSF031C07- CACATTCTGAGCCTGATCCTGAAAGCAGGA
JMSF030C07- CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTC
rJMSF031C07+ CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTCAGGTGGATATGGGAGTATGAAG
rJMSF030C07+ CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTCAGGTGGATATGGGAGTATGAAG
                      ____________________________________________________________
consensus CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTCAGGTGGATATGGGAGTATGAAG
 
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rJMSF031C07+ GAGAAAAATATCCTATTGATGGTACAGATGAGGTTGTGATACAGTCTAATTTGATGCCTT
rJMSF030C07+ GAGAAAAATATCCTATTGATGGTACAGATGAGGTTGTGATACAGTCTAATTTGATGCCTT
                      ____________________________________________________________
consensus GAGAAAAATATCCTATTGATGGTACAGATGAGGTTGTGATACAGTCTAATTTGATGCCTT
 
. : . : . : . : . : . :
rJMSF031C07+ CTTTACCTCCCTCATTTATTATGGAATTTACATGAATAAAATTGATTCCTATTGCCACAG
rJMSF030C07+ CTTTACCTCCCTCATTTATTATGGAATTTACATGAATAAAATTGATTCCTATTGCCACAG
JMFS021E03+ AG
                      ____________________________________________________________
consensus CTTTACCTCCCTCATTTATTATGGAATTTACATGAATAAAATTGATTCCTATTGCCACAG
 
. : . : . : . : . : . :
rJMSF031C07+ ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
rJMSF030C07+ ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
JMFS021E03+ ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
                      ____________________________________________________________
consensus ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
 
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rJMSF031C07+ GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACNTGATGCGGATGGTTTGGGTCCC
rJMSF030C07+ GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACTTGATGCGGATGGTTTGGGTCCC
JMFS021E03+ GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACTTGATGCGGATGGTTTGGGTCCC
                      ____________________________________________________________
consensus GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACTTGATGCGGATGGTTTGGGTCCC
 
. : . : . : . : . : . :
rJMSF031C07+ GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
rJMSF030C07+ GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
JMFS021E03+ GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
                      ____________________________________________________________
consensus GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
 
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rJMSF031C07+ TGATCTTCTTCCATTTNTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
rJMSF030C07+ TGATCTTCTTCCATTTTTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
JMFS021E03+ TGATCTTCTTCCATTTTTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
                      ____________________________________________________________
consensus TGATCTTCTTCCATTTTTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
 
. : . : . : . : . : . :
rJMSF031C07+ TGTCGTCATTTTGTAGGATAATAGCAAT
rJMSF030C07+ TGTCGTCATTTTGTAGGATAATAGCAAT
JMFS021E03+ TGTCGTCATTTTGTAGGATAATAGCAATTGTAAAGATTGTAGTTTAATGAATCAATTTGT
                      ____________________________________________________________
consensus TGTCGTCATTTTGTAGGATAATAGCAATTGTAAAGATTGTAGTTTAATGAATCAATTTGT
 
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JMFS021E03+ GGTGAAAGTTCTGTTACTAGTTAATTTATGCAAAAAAAAAAAAAAAAAACTCGAGACTAG
                      ____________________________________________________________
consensus GGTGAAAGTTCTGTTACTAGTTAATTTATGCAAAAAAAAAAAAAAAAAACTCGAGACTAG