Contig 000375:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS002E04Sequence482000375 (2)ref|XP_006361554.1|2e-74PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMSF005H11Sequence275000375 (2)ref|XP_009591095.1|1e-50PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A

Alignment

This contig is upended


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JMFS002E04+                                                                     TG
                      ____________________________________________________________
consensus                                                                       TG
 
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JMFS002E04+           AAGGGTTGTTGCCGGTGATGTTGATGAGGCGGCTGAGGCCGAAGTCGGAGATGTAGGGTT
                      ____________________________________________________________
consensus             AAGGGTTGTTGCCGGTGATGTTGATGAGGCGGCTGAGGCCGAAGTCGGAGATGTAGGGTT
 
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JMFS002E04+           GGAAGTCACGGTCCAGGAGAATGTTGGAGGGCTTTATGTCTCCATGGACGAATTTTCTGG
                      ____________________________________________________________
consensus             GGAAGTCACGGTCCAGGAGAATGTTGGAGGGCTTTATGTCTCCATGGACGAATTTTCTGG
 
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JMFS002E04+           GGCTGCATTCATGGAGATAGGCCAAGCCCCGGGCTGTTCCCTTTGCGATTCTTAGCCTTG
                      ____________________________________________________________
consensus             GGCTGCATTCATGGAGATAGGCCAAGCCCCGGGCTGTTCCCTTTGCGATTCTTAGCCTTG
 
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JMFS002E04+           TAGACCATGTTAGGTTTGGTAATGGCTGACCATTTCTCCCTGTACAATCCAACATAGAAA
                      ____________________________________________________________
consensus             TAGACCATGTTAGGTTTGGTAATGGCTGACCATTTCTCCCTGTACAATCCAACATAGAAA
 
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JMSF005H11+                          GCAGAAGCCAAGCTCCCATTGGATATGAAATCAGTGATGAGAAGC
JMFS002E04+           TGAAAAACATGAAGTGCAGAAGCCAAGCTGCCATTGGATATGAAATCACTGATAAGAAGC
                      ____________________________________________________________
consensus             TGAAAAACATGAAGTGCAGAAGCCAAGCTGCCATTGGATATGAAATCAGTGATGAGAAGC
 
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JMSF005H11+           TTCTCATCAGGAGCCCAGTAATAAGCCCTCAACCTCACAATATTAGGGTGCTTCACCCTT
JMFS002E04+           TTCTCATCAGGAGCCCAGTAATAAGCTCTCAACTTCACAATGTTAGGGTGTTTCACCCTC
                      ____________________________________________________________
consensus             TTCTCATCAGGAGCCCAGTAATAAGCTCTCAACTTCACAATGTTAGGGTGTTTCACCCTT
 
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JMSF005H11+           CCAATTGCTTGAACCTCAGACACAAACTCCTTATACCTCTGTTCACCACCTTCCCCCAAT
JMFS002E04+           CCAATGGCTTGAATCTCGGCAACGAACTCCTTGTACCTCTGCTCCCCGCCTTCCCCTAAT
                      ____________________________________________________________
consensus             CCAATTGCTTGAATCTCGGCCACGAACTCCTTGTACCTCTGTTCCCCGCCTTCCCCTAAT
 
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JMSF005H11+           CTC                                                         
JMFS002E04+           CTCCTAACCGCGACAGGAACTCCATTCCCGAGCACAACCTTATACACAATCCCGAGCCCG
                      ____________________________________________________________
consensus             CTCCTAACCGCGACAGGAACTCCATTCCCGAGCACAACCTTATACACAATCCCGAGCCCG