Contig 000322:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN012B24Sequence622000322 (4)ref|XP_009586861.1|6e-57PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT
JMFN029P11Sequence525000322 (4)ref|XP_009586861.1|2e-53PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT
JMSF022M04Sequence668000322 (4)ref|XP_009586861.1|1e-56PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT616000322 (4)ref|XP_009586861.1|6e-57PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT

Alignment

This contig is upended


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JMFN012B24- TCTCTCTAGACTAGAAATAGCT
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consensus TCTCTCTAGACTAGAAATAGCT
 
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JMFN012B24- CACCGATTAAAGCTTCTCTTTCTCGATCTTTGCCGCCTGAATATCTAAAGAGATGGCCGG
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consensus CACCGATTAAAGCTTCTCTTTCTCGATCTTTGCCGCCTGAATATCTAAAGAGATGGCCGG
 
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JMFN012B24- CCGTGGAAAGACTCTTGGTTCCGGAGCTGCGAAGAAGGCTCAGTCACGTAGCAGCAAAGC
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consensus CCGTGGAAAGACTCTTGGTTCCGGAGCTGCGAAGAAGGCTCAGTCACGTAGCAGCAAAGC
 
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JMFN029P11+ CGGGCTCCAGTTCCCCGTCGGTCGTATTGCCCGTTTTCTCAAGGCCGGCAAGTACGCCGA
JMFN012B24- CGGGCTCCAGTTCCCCGTCGGTCGTATTGCCCGTTTTCTCAAGGCCGGCAAGTACGCCGA
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consensus CGGGCTCCAGTTCCCCGTCGGTCGTATTGCCCGTTTTCTCAAGGCCGGCAAGTACGCCGA
 
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rJMSF022M04+ CCGGTGCTCCCGTCTATCTCGCCGCCGTGCTCGAATATCTTGCCGCCGA
JMFN029P11+ GCGTGTTGGAGCCGGTGCTCCCGTCTATCTCGCCGCCGTGCTCGAATATCTTGCCGCCGA
JMSF022M04- CCGGTGCTCCCGTCTATCTCGCCGCCGTGCTCGAATATCTTGCCGCCGA
JMFN012B24- GCGTGTTGGAGCCGGTGCTCCCGTCTATCTCGCCGCCGTGCTCGAATATCTTGCCGCCGA
                      ____________________________________________________________
consensus GCGTGTTGGAGCCGGTGCTCCCGTCTATCTCGCCGCCGTGCTCGAATATCTTGCCGCCGA
 
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rJMSF022M04+ GGTCCTGGAATTGGCCGGAAACGCAGCTCGGGACAACAAGAAGACGAGGATTGTGCCGAG
JMFN029P11+ GGTCCTGGAATTGGCCGGAAACGCAGCTCGGGACAACAAGAAGACGAGGATTGTGCCGAG
JMSF022M04- GGTCCTGGAATTGGCCGGAAACGCAGCTCGGGACAACAAGAAGACGAGGATTGTGCCGAG
JMFN012B24- GGTCCTGGAATTGGCCGGAAACGCAGCTCGGGACAACAAGAAGACGAGGATTGTGCCGAG
                      ____________________________________________________________
consensus GGTCCTGGAATTGGCCGGAAACGCAGCTCGGGACAACAAGAAGACGAGGATTGTGCCGAG
 
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rJMSF022M04+ GCATATCCAATTGGCAGTGAGGAACGACGAGGAGCTGAGCAAACTGCTGGGGGATGTGAC
JMFN029P11+ TCATATCCAATTGGCAGTGAGGAACGACGAGGAGCTGAGCAAACTGCTGGGGGATGTGAC
JMSF022M04- GCATATCCAATTGGCAGTGAGGAACGACGAGGAGCTGAGCAAACTGCTGGGGGATGTGAC
JMFN012B24- GCATATCCAATTGGCAGTGAGGAACGACGAGGAGCTGAGCAAACTGCTGGGGGATGTGAC
                      ____________________________________________________________
consensus GCATATCCAATTGGCAGTGAGGAACGACGAGGAGCTGAGCAAACTGCTGGGGGATGTGAC
 
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rJMSF022M04+ GATAGCCAATGGCGGCGTGATGCCCAACATCCACAACCTTCTGCTCCCAAAGAAGGCCGG
JMFN029P11+ GATAGCCAATGGCGGCGTGATGCCCAACATCCACAACCTTCTGCTCCCAAAGAAGGCCGG
JMSF022M04- GATAGCCAATGGCGGCGTGATGCCCAACATCCACAACCTTCTGCTCCCAAAGAAGGCCGG
JMFN012B24- GATAGCCAATGGCGGCGTGATGCCCAACATCCACAACCTTCTGCTCCCAAAGAAGGCCGG
                      ____________________________________________________________
consensus GATAGCCAATGGCGGCGTGATGCCCAACATCCACAACCTTCTGCTCCCAAAGAAGGCCGG
 
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rJMSF022M04+ CGGGTCATCAAAGCCCGGCGCCGATGAGGATTAGACGGAGAGAGGAGGGGATTTGGTTGT
JMFN029P11+ CGGGTCATCAAAGCCCGGCGCCGATGAGGATTAGA
JMSF022M04- CGGGTCATCAAAGCCCGGCGCCGATGAGGATTAGA
JMFN012B24- CGGGTCATCAAAGCCCGGCGCCGATGAGGATTAGACGGAGAGAGGAGGGGATTTGGTTGT
                      ____________________________________________________________
consensus CGGGTCATCAAAGCCCGGCGCCGATGAGGATTAGACGGAGAGAGGAGGGGATTTGGTTGT
 
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rJMSF022M04+ TGTTTTGTGTTAGGTTAGAATCTGATTACGTAGATCCTTTGTTGTTGCTATAATTTTTAG
JMFN012B24- TGTTTTGTGTTAGGTTAGAATCTGATTACGTAGATCCTTTGTTGTTGCTATAATTTTTAG
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consensus TGTTTTGTGTTAGGTTAGAATCTGATTACGTAGATCCTTTGTTGTTGCTATAATTTTTAG
 
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rJMSF022M04+ CAGGTTTTTTGTTTTGTTTTTG
JMFN012B24- CAGGTTNTTTGTTTTGTTTTTGTTTATACAAGTGAATGAATGGAAGAATGAAAAATGGAA
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consensus CAGGTTTTTTGTTTTGTTTTTGTTTATACAAGTGAATGAATGGAAGAATGAAAAATGGAA