Contig 000313:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005F21Sequence527000313 (2)ref|XP_004171732.1|1e-12PREDICTED: oxysterol-binding protein-related protein 2A-like, partial [Cucumis
JMFN007O24Sequence548000313 (2)ref|XP_010246724.1|4e-12PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X2 [Nelumb

Alignment

This contig is upended


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JMFN005F21+                                                               AATTGTAA
JMFN007O24+                                                               AATTGTAA
                      ____________________________________________________________
consensus                                                                 AATTGTAA
 
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JMFN005F21+           AATATATTATATTAAAACATTCAAACTCAAAAACAATAATAAAAGTATAACACTATACAA
JMFN007O24+           AATATATTATATTAAAACATTCAAACTCAAAAACAATAATAAAAGTATAACACTATACAA
                      ____________________________________________________________
consensus             AATATATTATATTAAAACATTCAAACTCAAAAACAATAATAAAAGTATAACACTATACAA
 
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JMFN005F21+           TATTACATCGTTAAAAACAGTATCAAATATATTAATAAATATAATCTAATCATCTCCTAA
JMFN007O24+           TATTACATCGTTAAAAACAGTATCAAATATATTAATAAATATAATCTAATCATCTCCTAA
                      ____________________________________________________________
consensus             TATTACATCGTTAAAAACAGTATCAAATATATTAATAAATATAATCTAATCATCTCCTAA
 
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JMFN005F21+           GGATAATGTTATATATACTAGTTGTGACCTGAGGACAACATCAAAACTCATTTAATCATA
JMFN007O24+           GGATAATGTTATATATACTAGTTGTGACCTGAGGACAACATCAAAACTCATTTAATCATA
                      ____________________________________________________________
consensus             GGATAATGTTATATATACTAGTTGTGACCTGAGGACAACATCAAAACTCATTTAATCATA
 
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JMFN005F21+           TGAAATAAAGAAAGCCAATTGGCATTAAGAAATCAAGGAATGAGCTACACTGCAGACCAT
JMFN007O24+           TGAAATAAAGAAAGCCAATTGGCATTAAGAAATCAAGGAATGAGCTACACTGCAGACCAT
                      ____________________________________________________________
consensus             TGAAATAAAGAAAGCCAATTGGCATTAAGAAATCAAGGAATGAGCTACACTGCAGACCAT
 
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JMFN005F21+           GTCCCCAGCATACCTTGCTCCAATGAAAAATCTCCCCATCATCAAATTCTACCTTGAAAA
JMFN007O24+           GTCCCCAGCATACCTTGCTCCACTGAAAAATCTCCCCATCATCAAATTCTACCTTGAAAA
                      ____________________________________________________________
consensus             GTCCCCAGCATACCTTGCTCCACTGAAAAATCTCCCCATCATCAAATTCTACCTTGAAAA
 
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JMFN005F21+           AGTTAGAGCTCCACTGAAAATTTTGGATTTAAGGTTACTATCACCCCAGAATTTCCAACC
JMFN007O24+           AGTTAGAGCTCCACTGAAAATTTTGGATTTAAGGTTACTATCACCCCAGAATTTCCAACC
                      ____________________________________________________________
consensus             AGTTAGAGCTCCACTGAAAATTTTGGATTTAAGGTTACTATCACCCCAGAATTTCCAACC
 
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JMFN005F21+           TCTACCTTCACAATGACATGCAATAACTGTTGGGTAGTGACTAACCATAGAATAGAGCAA
JMFN007O24+           TCTACCTTCACAATGACATGCAATAACTGTTGGGTAGTGACTAACCATAGAATAGAGCAA
                      ____________________________________________________________
consensus             TCTACCTTCACAATGACATGCAATAACTGTTGGGTAGTGACTAACCATAGAATAGAGCAA
 
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JMFN005F21+           TAGAGTAGGCGGTAGGGGAAGCGGCGGTCGGCGGTCGGCGAAGCAGGAAGTGACGTTGGC
JMFN007O24+           TAGAGTAGGCGGTAGGGGAAGCGGCGGTCGGCGGTCGGCGAAGCAGGAAGTGACGTTGGC
                      ____________________________________________________________
consensus             TAGAGTAGGCGGTAGGGGAAGCGGCGGTCGGCGGTCGGCGAAGCAGGAAGTGACGTTGGC
 
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JMFN005F21+           GGTTGGCAGTCGGTGGTCAGAGGGAAATAGTGGCGGTGG                     
JMFN007O24+           GGTTGGCAGTCGGTGGTCAGAGGGAAATAGTGGCGGTGGTGTCAGGGACTTAGGGGAGAG
                      ____________________________________________________________
consensus             GGTTGGCAGTCGGTGGTCAGAGGGAAATAGTGGCGGTGGTGTCAGGGACTTAGGGGAGAG