Contig 000297:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001N11Sequence570000297 (6)dbj|BAQ15377.1|9e-110cryptochrome 1 [Ipomoea nil]729006767 (7)dbj|BAQ15377.1|8e-43cryptochrome 1 [Ipomoea nil]
JMFF034D21Sequence566000297 (6)dbj|BAQ15377.1|6e-109cryptochrome 1 [Ipomoea nil]546006767 (7)dbj|BAF95170.1|5e-30cryptochrome 1 [Ipomoea nil]
JMFF051G12Sequence590000297 (6)dbj|BAQ15377.1|2e-86cryptochrome 1 [Ipomoea nil]498006767 (7)dbj|BAF95170.1|6e-24cryptochrome 1 [Ipomoea nil]
JMFS118F12Sequence600000297 (6)dbj|BAQ15377.1|6e-103cryptochrome 1 [Ipomoea nil]
JMSF021I15Sequence670000297 (6)dbj|BAQ15377.1|1e-119cryptochrome 1 [Ipomoea nil]813006767 (7)dbj|BAQ15377.1|3e-88cryptochrome 1 [Ipomoea nil]
JMSF022E02Sequence672000297 (6)dbj|BAQ15377.1|3e-120cryptochrome 1 [Ipomoea nil]758006767 (7)dbj|BAQ15377.1|7e-78cryptochrome 1 [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF021I15+ CTGAAGGACA
JMSF022E02+ TACTGAAGGACA
                      ____________________________________________________________
consensus TACTGAAGGACA
 
. : . : . : . : . : . :
JMSF021I15+ TCGAGACACATCACCAGAAACAATCCGTTTAGGAGGGAGAAGTGGAGCCTCGGGATCATA
JMFS118F12+ GGGATCATA
JMFF001N11+ AGGGAGAAGTGGAGCCTCGGGATCATA
JMFF034D21+ AGGGAGAAGTGGAGCCTCGGGATCATA
JMSF022E02+ TCGAGACACATCACCAGAAACAATCCGTTTAGGAGGGAGAAGTGGAGCCTCGGGATCATA
                      ____________________________________________________________
consensus TCGAGACACATCACCAGAAACAATCCGTTTAGGAGGGAGAAGTGGAGCCTCGGGATCATA
 
. : . : . : . : . : . :
JMSF021I15+ AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFS118F12+ AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFF001N11+ AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFF034D21+ AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMSF022E02+ AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFF051G12+ AAGGCATCTATCCCAAAAAGCGCTGAAGG-TGTGAAAGGGTGACCTTCATC
                      ____________________________________________________________
consensus AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
 
. : . : . : . : . : . :
JMSF021I15+ ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFS118F12+ ATCCACAACTTCGCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFF001N11+ ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFF034D21+ ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMSF022E02+ ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFF051G12+ ATCCACAACTTCNCAGGGCTCATACAGCAAATCAGAATGNAAGGAGCGCACAGTCACACC
                      ____________________________________________________________
consensus ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
 
. : . : . : . : . : . :
JMSF021I15+ TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFS118F12+ TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFF001N11+ TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFF034D21+ TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMSF022E02+ TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFF051G12+ TGAAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
                      ____________________________________________________________
consensus TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
 
. : . : . : . : . : . :
JMSF021I15+ GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFS118F12+ GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFF001N11+ GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFF034D21+ GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMSF022E02+ GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFF051G12+ GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
                      ____________________________________________________________
consensus GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
 
. : . : . : . : . : . :
JMSF021I15+ ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFS118F12+ ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFF001N11+ ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFF034D21+ ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMSF022E02+ ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFF051G12+ ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
                      ____________________________________________________________
consensus ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
 
. : . : . : . : . : . :
JMSF021I15+ ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFS118F12+ ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFF001N11+ ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFF034D21+ ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMSF022E02+ ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFF051G12+ ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
                      ____________________________________________________________
consensus ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
 
. : . : . : . : . : . :
JMSF021I15+ TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFS118F12+ TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFF001N11+ TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFF034D21+ TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMSF022E02+ TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFF051G12+ TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
                      ____________________________________________________________
consensus TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
 
. : . : . : . : . : . :
JMSF021I15+ AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFS118F12+ AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFF001N11+ AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFF034D21+ AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMSF022E02+ AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFF051G12+ AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
                      ____________________________________________________________
consensus AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
 
. : . : . : . : . : . :
JMSF021I15+ TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
JMFS118F12+ TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
JMFF001N11+ TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAAC
JMFF034D21+ TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAAC
JMSF022E02+ TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
JMFF051G12+ TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
                      ____________________________________________________________
consensus TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
 
. : . : . : . : . : . :
JMSF021I15+ ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTC
JMFS118F12+ ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTG
JMSF022E02+ ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTC
JMFF051G12+ ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTCCGG
                      ____________________________________________________________
consensus ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTCCGG