| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018L20 | Sequence | 557 | 000266 (10) | ref|XP_010556126.1| | 1e-80 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | 610 | 000266 (10) | ref|XP_010556126.1| | 2e-81 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] |
| JMFF030O07 | Sequence | 237 | 000266 (10) | ref|XP_011036092.1| | 1e-17 | PREDICTED: nuclear transport factor 2 isoform X1 [Populus euphratica] gb|ABK9383 | |||||
| JMFF047K17 | Sequence | 477 | 000266 (10) | ref|XP_010556126.1| | 4e-82 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | 356 | 018076 | ref|XP_010556126.1| | 2e-12 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] |
| JMFF048H10 | Sequence | 413 | 000266 (10) | ref|XP_010556126.1| | 2e-82 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | 402 | 002102 (159) | sp|Q96471.1|DCAM_IPONI | 6e-35 | RecName: Full=S-adenosylmethionine decarboxylase proenzyme; Short=AdoMetDC; Sho |
| JMFN003J23 | Sequence | 614 | 000266 (10) | ref|XP_010556126.1| | 3e-81 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | |||||
| JMFN003K10 | Sequence | 609 | 000266 (10) | ref|XP_010556126.1| | 3e-81 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | |||||
| JMFN004P20 | Sequence | 619 | 000266 (10) | ref|XP_010556126.1| | 3e-81 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | |||||
| JMFN034K09 | Sequence | 608 | 000266 (10) | ref|XP_010556126.1| | 3e-81 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | |||||
| JMFN043F01 | Sequence | 627 | 000266 (10) | ref|XP_010556126.1| | 3e-81 | PREDICTED: nuclear transport factor 2-like [Tarenaya hassleriana] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN043F01+ ATACCAAACAGGGAAACAAGCCATATAAAATAGCAAACCACCCTGTCCATTTCTTAAGCA
JMFN003J23+ AAAATAGCAAACCACCCTTTCCATTTCTTAAGCA
JMFN034K09+ AAAATAGCAAACCACCCTTTCCATTTCTTAAGCA
JMFN004P20+ AAAATAGCAAACCACCCTTTCCATTTCTTAAGCA
JMFN003K10+ AGCAAACCACCCTTTCCATTTCTTAAGCA
rJMFF018L20- TTTCTTAAGCA
____________________________________________________________
consensus ATACCAAACAGGGAAACAAGCCATATAAAATAGCAAACCACCCTTTCCATTTCTTAAGCA
. : . : . : . : . : . :
JMFN043F01+ TGCCAAAGTAATAAGTTACAGCCAAATTGTTTCCAATCAAATTCAACAGTCTGTTTCAGT
JMFN003J23+ TGCCAAAGTAATAAGTTACAGCCAAATTGTTTCCAATCAAATTCAACAGTCTGTTTCAGT
JMFN034K09+ TGCCAAAGTAATAAGTTACAGCCAAATTGTTTCCAATCAAATTCAACAGTCTGTTTCAGT
JMFN004P20+ TGCCAAAGTAATAAGTTACAGCCAAATTGTTTCCAATCAAATTCAACAGTCTGTTTCAGT
JMFN003K10+ TGCCAAAGTAATAAGTTACAGCCAAATTGTTTCCAATCAAATTCAACAGTCTGTTTCAGT
JMFF018L20+ TCAACAGTCTGTTTCAGT
rJMFF018L20- TGCCAAAGTAATAAGTTACAGCCAAATTGTTTCCAATCAAATTCAACAGTCTGTTTCAGT
____________________________________________________________
consensus TGCCAAAGTAATAAGTTACAGCCAAATTGTTTCCAATCAAATTCAACAGTCTGTTTCAGT
. : . : . : . : . : . :
JMFN043F01+ CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
JMFN003J23+ CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
JMFN034K09+ CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
JMFN004P20+ CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
rJMFF030O07- GTATCTTCTGAATT
JMFN003K10+ CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
JMFF018L20+ CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
rJMFF018L20- CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
____________________________________________________________
consensus CAAAATTGAATAAGCGCAAACAAGCAAAACAAACACATTGAAACAAGTATCTTCTGAATT
. : . : . : . : . : . :
JMFN043F01+ CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
JMFN003J23+ CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
JMFN034K09+ CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
JMFN004P20+ CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
rJMFF030O07- CTANAAGAATCTGAAGTTCCATATTGTGTGTTCAGTTTTTTGAAACAATTTCCACCCTTC
JMFN003K10+ CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
JMFF018L20+ CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
rJMFF018L20- CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
JMFF047K17+ AGAAGAATCTGAAGTTCCATATGTT-GTTTCAGTTTTTGNAAACAATTTCCACCCTTC
____________________________________________________________
consensus CTAGAAGAATCTGAAGTTCCATATTGT-TGTTCAGTTTTTTGAAACAATTTCCACCCTTC
. : . : . : . : . : . :
JMFN043F01+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
JMFN003J23+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
JMFN034K09+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
JMFN004P20+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
rJMFF030O07- NTGCATAGTTCNAGCNGAATATGTCNTTGAACNCNTACAAACTTCCTTGNGGTGTCNGCN
JMFN003K10+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
JMFF018L20+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
rJMFF018L20- ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
JMFF048H10+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
JMFF047K17+ ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
____________________________________________________________
consensus ATGCATAGTTCAAGCGGAATATGTCATTGAACACATAGAAACTTCCTTGGGGTGTCGGCA
. : . : . : . : . : . :
JMFN043F01+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
JMFN003J23+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
JMFN034K09+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
JMFN004P20+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
rJMFF030O07- TCNNNTGGAACATCTGACTGAACTTGANGGCGTGCTGTTCNCCNGCTAGTTGGAGATTGC
JMFN003K10+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
JMFF018L20+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
rJMFF018L20- TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
JMFF048H10+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
JMFF047K17+ TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
____________________________________________________________
consensus TCAAATGGAACATCTGACTGAACTTGAGGGCGTGCTGTTCGCCGGCTAGTTGGAGATTGC
. : . : . : . : . : . :
JMFN043F01+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
JMFN003J23+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
JMFN034K09+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
JMFN004P20+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
rJMFF030O07- CGCTGACNNANACNANCATGCCGCCGGCGGGTCCAGATGGCTG
JMFN003K10+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
JMFF018L20+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
rJMFF018L20- CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
JMFF048H10+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
JMFF047K17+ CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
____________________________________________________________
consensus CGCTGACAAAGACGAGCATGCCGCCGGCGGGTCCAGATGGCTGGCAGTCGACGGTGGTGA
. : . : . : . : . : . :
JMFN043F01+ TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
JMFN003J23+ TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
JMFN034K09+ TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
JMFN004P20+ TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
JMFN003K10+ TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
JMFF018L20+ TCTGGTGCTTGCACNGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
rJMFF018L20- TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
JMFF048H10+ TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
JMFF047K17+ TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
____________________________________________________________
consensus TCTGGTGCTTGCACTGCTGAAAGGGGAGACTGGTTAGCTTGGCGACGATGTTCTGAGAAC
. : . : . : . : . : . :
JMFN043F01+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
JMFN003J23+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
JMFN034K09+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
JMFN004P20+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
JMFN003K10+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
JMFF018L20+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
rJMFF018L20- CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
JMFF048H10+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
JMFF047K17+ CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
____________________________________________________________
consensus CCTGAATCTTCTGGCCCTCGAAAGTCAACATGGAGCCATCCTGGTAGAGGTTTGCAAGGC
. : . : . : . : . : . :
JMFN043F01+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
JMFN003J23+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
JMFN034K09+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
JMFN004P20+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
JMFN003K10+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
JMFF018L20+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
rJMFF018L20- CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
JMFF048H10+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
JMFF047K17+ CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
____________________________________________________________
consensus CGGCGCGATTGGCGTCGAAGGTGGAGTAGTAGTGCTCGACGAATGCCTTGGCTACGGCGT
. : . : . : . : . : . :
JMFN043F01+ CAGGATCCATTTCTCCGATTTCGATCTC
JMFN003J23+ CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTC
JMFN034K09+ CAGGATCCATTTCTCCGATTTCGATCTCTTATCTC
JMFN004P20+ CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTC
JMFN003K10+ CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTC
JMFF018L20+ CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTCTCTCTCT
rJMFF018L20- CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTCTCTCTCT
JMFF048H10+ CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTCTCTCTCT
JMFF047K17+ CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTCTCTCTCTCCTCTGCAAGTC
____________________________________________________________
consensus CAGGATCCATTTCTCCGATTTCGATCTCTTATCTCTCTTTCTCTCTCTCCTCTGCAAGTC