Contig 000223:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039I23Sequence603000223 (3)ref|XP_009789141.1|7e-76PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]755002652 (4)ref|XP_009789141.1|2e-107PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]
JMSF007H07Sequence404000223 (3)ref|XP_009612581.1|7e-29PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana tomentosiformis]771002652 (4)ref|XP_009789141.1|7e-147PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]
JMSF033E12Sequence653000223 (3)ref|XP_009789141.1|8e-90PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]787002652 (4)ref|XP_009789141.1|1e-147PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF033E12+                  CCGGAGATAAGAAGCAGCAGCATATCCACACATATCACCAATAACTCCACCAC
JMFF039I23+                                                                    CAC
                      ____________________________________________________________
consensus                    CCGGAGATAAGAAGCAGCAGCATATCCACACATATCACCAATAACTCCACCAC
 
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JMSF033E12+           CGAGAGCAACAAATGTACACCGTCGGTCCAATCGTGATTCAATAGCTTTATCAAAAACTT
JMFF039I23+           CGAGAGCAACAAATGTACACCGTCGGTCCAATCGTGATTCAATAGCTTTATCAAAAACTT
                      ____________________________________________________________
consensus             CGAGAGCAACAAATGTACACCGTCGGTCCAATCGTGATTCAATAGCTTTATCAAAAACTT
 
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JMSF033E12+           TCATGAGAGTTTCCATGTTCTTAAATTTCTCTCCATCTGGCAAGATCACAGTTTCAACAC
JMFF039I23+           TCATGAGAGTTTCCATGTTCTTAAATTTCTCTCCATCTGGCAAGATCACAGTTTCAACAC
                      ____________________________________________________________
consensus             TCATGAGAGTTTCCATGTTCTTAAATTTCTCTCCATCTGGCAAGATCACAGTTTCAACAC
 
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JMSF033E12+           TAACATTAGGATTTCCATCTGTTAAAGCACTGATAGTTTTGTCCAGATATAATGGAGCTA
JMFF039I23+           TAACATTAGGATTTCCATCTGTTAAAGCACTGATAGTTTTGTCCAGATATAATGGAGCTA
                      ____________________________________________________________
consensus             TAACATTAGGATTTCCATCTGTTAAAGCACTGATAGTTTTGTCCAGATATAATGGAGCTA
 
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JMSF033E12+           CTGTAGTATTTGTGACTATAAGAACTTTCTTGCCATGAATATGCCTCTGAAGAAGCTCGG
JMSF007H07+                           TATAAGAACTTTCTTGCCATGAATATGCCTCTGAAGAAGCTCGG
JMFF039I23+           CTGTAGTATTTGTGACTATAAGAACTTTCTTGCCATGAATATGCCTCTGAAGAAGCTCGG
                      ____________________________________________________________
consensus             CTGTAGTATTTGTGACTATAAGAACTTTCTTGCCATGAATATGCCTCTGAAGAAGCTCGG
 
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JMSF033E12+           GTTGATGAAGAAGACCAGAGCCGATGTAAATCGGGTAGCTCCGGTCACCCAAATCAACCT
JMSF007H07+           GTTGATGAAGAAGACCAGAGCCGATGTAAATCGGGTAGCTCCGGTCACCCAAATCAACCT
JMFF039I23+           GTTGATGAAGAAGACCAGAGCCGATGTAAATCGGGTAGCTCCGGTCACCCAAATCAACCT
                      ____________________________________________________________
consensus             GTTGATGAAGAAGACCAGAGCCGATGTAAATCGGGTAGCTCCGGTCACCCAAATCAACCT
 
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JMSF033E12+           CAACAACCGTGGGGACGGGAGAAGATGCTTTACTCTGAGGAGACTGATCTATCACGGGAA
JMSF007H07+           CAACAACCGTGGGGACGGGAGAAGATGCTTTACTCTGAGGAGACTGATCTATCACGGGAA
JMFF039I23+           CAACAACCGTGGGGACGGGAGAAGATGCTTTACTCTGAGGAGACTGATCTATCACGGGAA
                      ____________________________________________________________
consensus             CAACAACCGTGGGGACGGGAGAAGATGCTTTACTCTGAGGAGACTGATCTATCACGGGAA
 
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JMSF033E12+           CCGCGGAGCTTGCAAACACCTTTAGTCGGTTGGGAGCATTAGACTCCAAACGGCACCGAG
JMSF007H07+           CCGCGGAGCTTGCAAACACCTTTAGTCGGTTGGGAGCATTAGACTCCAAACGGCACCGAG
JMFF039I23+           CCGCGGAGCTTGCAAACACCTTTAGTCGGTTGGGAGCATTAGACTCCAAACGGCACCGAG
                      ____________________________________________________________
consensus             CCGCGGAGCTTGCAAACACCTTTAGTCGGTTGGGAGCATTAGACTCCAAACGGCACCGAG
 
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JMSF033E12+           AAGGAAGAGCGGCGGAGGCAGGTGCAGGGAGGCGCACGGCGAAGTCACGTAGGGTGGCTT
JMSF007H07+           AAGGAAGAGCGGCGGAGGCAGGTGCAGGGAGGCGCACGGCGAAGTCACGTAGGGTGGCTT
JMFF039I23+           AAGGAAGAGCGGCGGAGGCAGGTGCAGGGAGGCGCACGGCGAAGTCACGTAGGGTGGCTT
                      ____________________________________________________________
consensus             AAGGAAGAGCGGCGGAGGCAGGTGCAGGGAGGCGCACGGCGAAGTCACGTAGGGTGGCTT
 
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JMSF033E12+           TGTGGTGGGAGTGTGTGGAGAAGGCGGGATTGGGTGGGCAGAAACAGGAAGACGCCATAG
JMSF007H07+           TGTGGTGGGAGTGTGTGGAGAAGGCGGGATTGGGTGGGCAGAAACAGGAAGACGCCATAG
JMFF039I23+           TGTGGTGGGAGTGTGTGGAGAAGGCGGGATTGGGTGGGCAGAAACAGGAAGACGCCATAG
                      ____________________________________________________________
consensus             TGTGGTGGGAGTGTGTGGAGAAGGCGGGATTGGGTGGGCAGAAACAGGAAGACGCCATAG
 
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JMSF033E12+           GAAGAGAGAGAAAGAAAGGTGGGTTGGTCGCGATGAAGGTGGAAATGAAGATTTAACA  
JMSF007H07+           GAAGAGAGAGAAAGAAAGGTGGGTTGGTCGCGATGAAGGTGGAAATGAAGATTTAACA  
JMFF039I23+           GAAGAGAGAGAAAGAAAGGTGGGTTGGTCGCGATGAAGGTGGAAATGAAGATTTAACATT
                      ____________________________________________________________
consensus             GAAGAGAGAGAAAGAAAGGTGGGTTGGTCGCGATGAAGGTGGAAATGAAGATTTAACATT