| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016N22 | Sequence | 606 | 000215 (13) | gb|AAY41426.1| | 4e-86 | putative L24 ribosomal protein [Ipomoea batatas] | 607 | 000215 (13) | gb|AAY41426.1| | 4e-86 | putative L24 ribosomal protein [Ipomoea batatas] |
| JMFF038E04 | Sequence | 578 | 000215 (13) | gb|AAY41426.1| | 3e-86 | putative L24 ribosomal protein [Ipomoea batatas] | 625 | 000215 (13) | gb|AAY41426.1| | 5e-86 | putative L24 ribosomal protein [Ipomoea batatas] |
| JMFF045C21 | Sequence | 641 | 000215 (13) | gb|AAY41426.1| | 7e-86 | putative L24 ribosomal protein [Ipomoea batatas] | 641 | 000215 (13) | gb|AAY41426.1| | 2e-83 | putative L24 ribosomal protein [Ipomoea batatas] |
| JMFF046A06 | Sequence | 585 | 000215 (13) | gb|AAY41426.1| | 3e-86 | putative L24 ribosomal protein [Ipomoea batatas] | 516 | 000215 (13) | gb|AAY41426.1| | 1e-68 | putative L24 ribosomal protein [Ipomoea batatas] |
| JMFN032G10 | Sequence | 617 | 000215 (13) | gb|AAY41426.1| | 4e-86 | putative L24 ribosomal protein [Ipomoea batatas] | |||||
| JMSF042H01 | Sequence | 252 | 000215 (13) | gb|AAY41426.1| | 3e-05 | putative L24 ribosomal protein [Ipomoea batatas] | 209 | 000215 (13) | gb|AAY41426.1| | 2e-05 | putative L24 ribosomal protein [Ipomoea batatas] |
| JMSF052N17 | Sequence | 647 | 000215 (13) | gb|AAY41426.1| | 6e-86 | putative L24 ribosomal protein [Ipomoea batatas] | 615 | 000215 (13) | gb|AAY41426.1| | 4e-86 | putative L24 ribosomal protein [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
rJMFF045C21- CCTTATGGCGGATCACCCTGGAGAGTTTTTTTT
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTT
. : . : . : . : . : . :
rJMFF046A06- CAATTCGATTAAACTTTAAACCAATATAGAAAGCTGCGAACCAG-TTTCA
JMSF042H01+ CAATTCGATTAAACTTTAAACCAATATAGAAAGCTGCGAACCAG-TTTCA
rJMFF045C21- TTTTTTTGTCCAATTCGATTAAACTTTAAACCAATATAGAAAGCTGCGAACCAG-TTTCA
rJMSF042H01- AACCAATATAGAAAGCTGCGAACCAGTTTTCA
JMFN032G10+ CAATTCGATTAAACTTNAAACCAATATAGAAAGCTGCGAACCAG-TTTCA
JMFF045C21+ AATTCGATTAAACTTTAAACCAATATAGANAGCTGCGAACCAG-TTTCA
JMSF052N17+ CAATTCGATTAAACTTTAAACCAATATAGAAAGCTGCGAACCAG-TTTCA
rJMFF016N22- AG-TTTCA
rJMFF038E04- TATAGAAAGCTGCGAACCAG-TTTCA
JMFF016N22+ G-TTTCA
____________________________________________________________
consensus TTTTTTTGTCCAATTCGATTAAACTTTAAACCAATATAGAAAGCTGCGAACCAG-TTTCA
. : . : . : . : . : . :
rJMFF046A06- AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
JMSF042H01+ AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
rJMFF045C21- AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
rJMSF042H01- AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
JMFN032G10+ AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
JMFF045C21+ AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
JMSF052N17+ AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
rJMFF016N22- AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
rJMFF038E04- AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
rJMSF052N17- GTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
JMFF046A06+ GCAGGAAGTCTGAATAAGCAAAAATTNAACAATGTAAGATATAGT
JMFF016N22+ AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
JMFF038E04+ TGAATAAGCAAAAATTTAACAATGTAAGATATAGT
____________________________________________________________
consensus AAGTCTTGCAACAACGCAGGAAGTCTGAATAAGCAAAAATTTAACAATGTAAGATATAGT
. : . : . : . : . : . :
rJMFF046A06- AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
JMSF042H01+ AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
rJMFF045C21- AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
rJMSF042H01- AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
JMFN032G10+ AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
JMFF045C21+ AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
JMSF052N17+ AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
rJMFF016N22- AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
rJMFF038E04- AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
rJMSF052N17- AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
JMFF046A06+ AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
JMFF016N22+ AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
JMFF038E04+ AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
____________________________________________________________
consensus AGTGATAAAAGTGTACCAAAAACTAACAGACAAGCTCAAAATTAATCAACAGTCTGCATG
. : . : . : . : . : . :
rJMFF046A06- ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
JMSF042H01+ ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCG
rJMFF045C21- ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
rJMSF042H01- ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCG
JMFN032G10+ ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
JMFF045C21+ ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
JMSF052N17+ ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
rJMFF016N22- ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
rJMFF038E04- ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
rJMSF052N17- ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
JMFF046A06+ ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
JMFF016N22+ ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
JMFF038E04+ ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
____________________________________________________________
consensus ATGTCGTCGGCGGTGAACTTGGTTCCCTTATCCTTGTCATGGGCGGCGCGGCCCTTAGCC
. : . : . : . : . : . :
rJMFF046A06- TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
rJMFF045C21- TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
JMFN032G10+ TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
JMFF045C21+ TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
JMSF052N17+ TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
rJMFF016N22- TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
rJMFF038E04- TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
rJMSF052N17- TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
JMFF046A06+ TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
JMFF016N22+ TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
JMFF038E04+ TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
____________________________________________________________
consensus TTGCGTTCGATAAGCGACTTGCGGTCCTTGTCGAGGCGGAGCTTGGTGATAACAACCTTG
. : . : . : . : . : . :
rJMFF046A06- GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
rJMFF045C21- GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
JMFN032G10+ GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
JMFF045C21+ GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
JMSF052N17+ GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
rJMFF016N22- GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
rJMFF038E04- GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
rJMSF052N17- GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
JMFF046A06+ GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
JMFF016N22+ GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
JMFF038E04+ GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
____________________________________________________________
consensus GAAGGATGGATGCCGACGTTGACAGTGGATCCGTTAACCTTCTCCCGAGTAATGCGCTCA
. : . : . : . : . : . :
rJMFF046A06- ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
rJMFF045C21- ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
JMFN032G10+ ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
JMFF045C21+ ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
JMSF052N17+ ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
rJMFF016N22- ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
rJMFF038E04- ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
rJMSF052N17- ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
JMFF046A06+ ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
JMFF016N22+ ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
JMFF038E04+ ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
____________________________________________________________
consensus ATGTGAATCACCCATTTCTTACGGTAAACCTGAACTACCTTTCCTTCACGGCCCTTGTAA
. : . : . : . : . : . :
rJMFF046A06- GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
rJMFF045C21- GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTAACGTTGTAC
JMFN032G10+ GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
JMFF045C21+ GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTAACGTTGTAC
JMSF052N17+ GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
rJMFF016N22- GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
rJMFF038E04- GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
rJMSF052N17- GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
JMFF046A06+ GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
JMFF016N22+ GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
JMFF038E04+ GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
____________________________________________________________
consensus GTCCCGCGAACAACTTGAACCTCGTCGTCCTTCCTCACCGGCATCGACCTCACGTTGTAC
. : . : . : . : . : . :
rJMFF046A06- TTGGTGCGCTGGTCGGCCG
rJMFF045C21- TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
JMFN032G10+ TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
JMFF045C21+ TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
JMSF052N17+ TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
rJMFF016N22- TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
rJMFF038E04- TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
rJMSF052N17- TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
JMFF046A06+ TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
JMFF016N22+ TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
JMFF038E04+ TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
____________________________________________________________
consensus TTGGTGCGCTGGTCGGCCGACAAGGGCGCGCTCATAAGCACCCTGCGGAGACTAGACGGC
. : . : . : . : . : . :
rJMFF045C21- GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGG-AACTCTCGGGTTGTACTTC
JMFN032G10+ GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
JMFF045C21+ GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
JMSF052N17+ GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
rJMFF016N22- GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
rJMFF038E04- GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
rJMSF052N17- GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
JMFF046A06+ GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
JMFF016N22+ GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
JMFF038E04+ GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
____________________________________________________________
consensus GCCGTGAAGTGAGCCTTCCTGCTCTTGCGGCGGGAAGAGGAAACTCTCGGGTTGTACTTC
. : . : . : . : . : . :
rJMFF045C21- ATCTTCGCTG
JMFN032G10+ ATCTTCGCTGGCGTCTCACTTCTCTCTC
JMFF045C21+ ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCAC
JMSF052N17+ ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCC
rJMFF016N22- ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCCGTTC
rJMFF038E04- ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCCGTTC
rJMSF052N17- ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCC
JMFF046A06+ ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCCGTTC
JMFF016N22+ ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCCGTTC
JMFF038E04+ ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCCGTTC
____________________________________________________________
consensus ATCTTCGCTGGCGTCTCACTTCTCTCTCTCTGTCTCACTCTTCTGCAACCACGCCCGTTC