Contig 000207:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010A14Sequence490000207 (8)ref|NP_001275473.1|3e-18Aux/IAA protein [Solanum tuberosum] gb|AAM29182.1| Aux/IAA protein [Solanum tube685011018 (15)gb|ABM53871.1|4e-50IAA3 [Cestrum elegans]
JMFF014O04Sequence547000207 (8)gb|ABB55368.1|6e-31Aux/IAA protein-like [Solanum tuberosum]771011018 (15)ref|XP_009789143.1|8e-71PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris]
JMFF025D16Sequence584000207 (8)gb|ABB55368.1|3e-50Aux/IAA protein-like [Solanum tuberosum]732011018 (15)ref|XP_009789143.1|2e-61PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris]
JMFF031O04Sequence580000207 (8)gb|ABB55368.1|2e-49Aux/IAA protein-like [Solanum tuberosum]747011018 (15)ref|XP_009608764.1|4e-69PREDICTED: auxin-responsive protein IAA8-like [Nicotiana tomentosiformis]
JMFF034K17Sequence505000207 (8)gb|ABB55368.1|3e-28Aux/IAA protein-like [Solanum tuberosum]452011018 (15)
JMFF036L17Sequence551000207 (8)gb|ABB55368.1|1e-15Aux/IAA protein-like [Solanum tuberosum]
JMFF037F14Sequence531000207 (8)gb|ABB55368.1|5e-31Aux/IAA protein-like [Solanum tuberosum]761011018 (15)ref|XP_009608764.1|5e-69PREDICTED: auxin-responsive protein IAA8-like [Nicotiana tomentosiformis]
JMFS014D12Sequence608000207 (8)gb|ABB55368.1|1e-50Aux/IAA protein-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF025D16+ TGGAGA
JMFF031O04+ TGGAGA
JMFS014D12+ TGAATTGGAGA
                      ____________________________________________________________
consensus TGAATTGGAGA
 
. : . : . : . : . : . :
JMFF025D16+ GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
JMFF031O04+ GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
JMFS014D12+ GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
                      ____________________________________________________________
consensus GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
 
. : . : . : . : . : . :
JMFF025D16+ CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFF031O04+ CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFF014O04+ TGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFS014D12+ CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFF034K17+ TGGCAGGGTGCAGTGGAAACAGTA
JMFF037F14+ TGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
                      ____________________________________________________________
consensus CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
 
. : . : . : . : . : . :
JMFF025D16+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF031O04+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF014O04+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF010A14+ TGGAGATTGTGATCCAGGAA
JMFS014D12+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF034K17+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF037F14+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF036L17+ TGATCCAGGAA
                      ____________________________________________________________
consensus GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
 
. : . : . : . : . : . :
JMFF025D16+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF031O04+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF014O04+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF010A14+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFS014D12+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF034K17+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF037F14+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF036L17+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
                      ____________________________________________________________
consensus GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
 
. : . : . : . : . : . :
JMFF025D16+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF031O04+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF014O04+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF010A14+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFS014D12+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF034K17+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF037F14+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF036L17+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
                      ____________________________________________________________
consensus TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
 
. : . : . : . : . : . :
JMFF025D16+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF031O04+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF014O04+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF010A14+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFS014D12+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF034K17+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF037F14+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF036L17+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
                      ____________________________________________________________
consensus CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
 
. : . : . : . : . : . :
JMFF025D16+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF031O04+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF014O04+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF010A14+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFS014D12+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF034K17+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF037F14+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF036L17+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
                      ____________________________________________________________
consensus TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
 
. : . : . : . : . : . :
JMFF025D16+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF031O04+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF014O04+ ATTATCCTTCAATTCCTTTCAGTAAAA
JMFF010A14+ ATTATCCTTCAATTCCTTTCAGTAAAA
JMFS014D12+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF034K17+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF037F14+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF036L17+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
                      ____________________________________________________________
consensus ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
 
. : . : . : . : . : . :
JMFF025D16+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF031O04+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFS014D12+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF034K17+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF037F14+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF036L17+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
                      ____________________________________________________________
consensus GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
 
. : . : . : . : . : . :
JMFF025D16+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACT
JMFF031O04+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACT
JMFS014D12+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACTAGGGACCCTCCATT
JMFF034K17+ AAGAGGGAGAGAGCAGAGAAAAGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAA
JMFF037F14+ AAGAGGGAGAGAGCAGAGAAAAGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAA
JMFF036L17+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAAGTT
                      ____________________________________________________________
consensus AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAAGTT
 
. : . : . : . : . : . :
JMFF036L17+ ACAAAAAGCTTTTTTGCTGTCCCGATGTGAAACTCAATGCTTATTAAAAAAAACCTCCCT
                      ____________________________________________________________
consensus ACAAAAAGCTTTTTTGCTGTCCCGATGTGAAACTCAATGCTTATTAAAAAAAACCTCCCT
 
. : . : . : . : . : . :
JMFF036L17+ CGGCTACCCGCCCTCTCAAGTCTCAACCTTCAAGAACGTATGGAATTACAATTACTCCTT
                      ____________________________________________________________
consensus CGGCTACCCGCCCTCTCAAGTCTCAACCTTCAAGAACGTATGGAATTACAATTACTCCTT