Contig 000190:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009I07Sequence485000190 (3)ref|XP_009776316.1|2e-56PREDICTED: putative proline--tRNA ligase C19C7.06 [Nicotiana sylvestris] ref|XP127001051 (4)
JMFF033H09Sequence522000190 (3)ref|XP_009776316.1|1e-63PREDICTED: putative proline--tRNA ligase C19C7.06 [Nicotiana sylvestris] ref|XP730001051 (4)ref|XP_009600189.1|6e-76PREDICTED: putative proline--tRNA ligase C19C7.06 isoform X3 [Nicotiana tomento
JMSF045L14Sequence781000190 (3)ref|XP_009776316.1|5e-134PREDICTED: putative proline--tRNA ligase C19C7.06 [Nicotiana sylvestris] ref|XP790001051 (4)ref|XP_009600189.1|8e-102PREDICTED: putative proline--tRNA ligase C19C7.06 isoform X3 [Nicotiana tomento

Alignment

This contig is upended


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JMSF045L14+                                                            TGGTGACAGGA
                      ____________________________________________________________
consensus                                                              TGGTGACAGGA
 
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JMSF045L14+           ACAGCCAAGTATTCTTCGTATATCCTTCTATACAGTTCCAAAATATCAAGAACCTCTGCA
                      ____________________________________________________________
consensus             ACAGCCAAGTATTCTTCGTATATCCTTCTATACAGTTCCAAAATATCAAGAACCTCTGCA
 
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JMSF045L14+           TCTGCCTCCTCCTTTGTTGCAAAAGCAGTGTGCCCTTCTTGCCATAGAAACTCACGGCTT
                      ____________________________________________________________
consensus             TCTGCCTCCTCCTTTGTTGCAAAAGCAGTGTGCCCTTCTTGCCATAGAAACTCACGGCTT
 
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JMSF045L14+           CTAATGAAAGGAGTAGGATGGCTGAACTCCCAACGCACAACATTGCACCACTGATTGAGT
                      ____________________________________________________________
consensus             CTAATGAAAGGAGTAGGATGGCTGAACTCCCAACGCACAACATTGCACCACTGATTGAGT
 
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JMSF045L14+           CTCAAAGGTAAATCGCGATGCCCTCTTATCCACTTAGAGAAATAAGGATACATAACTGTT
                      ____________________________________________________________
consensus             CTCAAAGGTAAATCGCGATGCCCTCTTATCCACTTAGAGAAATAAGGATACATAACTGTT
 
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JMSF045L14+           TCACTAGTTGGCCGAATTGCAATAGGGACTTCCAACTCAGACTCTCCTGACTTTGTAACC
JMFF009I07+                                                                  TAACC
JMFF033H09+                             GCAATAGGGACTTCCAACTCAGACTCTCCTGACTTTGTAACC
                      ____________________________________________________________
consensus             TCACTAGTTGGCCGAATTGCAATAGGGACTTCCAACTCAGACTCTCCTGACTTTGTAACC
 
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JMSF045L14+           CAAGCAACCTCAGGTGCAAAACCCTCTATGTGGTCCTTTTCTTTTTGCAGAACGCCAGGA
JMFF009I07+           CAAGCAACCTCAGGTGCAAAACCCTCTATGTGGTCCTTTTCTTTTTGCAGAACGCCAGGA
JMFF033H09+           CAAGCAACNTCAGGTGCAAAACCCTCTATGTGGTCCTTTTCTTTTTGCAGAACGCCAGGA
                      ____________________________________________________________
consensus             CAAGCAACCTCAGGTGCAAAACCCTCTATGTGGTCCTTTTCTTTTTGCAGAACGCCAGGA
 
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JMSF045L14+           GACACAAAAAGTGGGAAGTAGCAGTTCTTGATCTTCATTTTCTTAATTTCAGCATCAAAA
JMFF009I07+           GACACAAAAAGTGGGAAGTAGCAGTTCTTGATCTTCATTTTCTTAATTTCAGCATCAAAA
JMFF033H09+           GACACAAAAAGTGGGAAGTAGCAGTTCTTGATCTTCATTTTCTTAATTTCAGCATCAAAA
                      ____________________________________________________________
consensus             GACACAAAAAGTGGGAAGTAGCAGTTCTTGATCTTCATTTTCTTAATTTCAGCATCAAAA
 
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JMSF045L14+           AAGGTTTGCATTATCTCCCAGATGGAAATTGCCCATGGCCGCAGAATGTAACAACCAGAT
JMFF009I07+           AAGGTTTGCATTATCTCCCAGATGGAAATTGCCCATGGCCGCAGAATGTAACAACCAGAT
JMFF033H09+           AAGGTTTGCATTATCTCCCAGATGGAAATTGCCCATGGCCGCAGAATGTAACAACCAGAT
                      ____________________________________________________________
consensus             AAGGTTTGCATTATCTCCCAGATGGAAATTGCCCATGGCCGCAGAATGTAACAACCAGAT
 
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JMSF045L14+           ATGTCATAATACTCAATCATTTCACTGGTAACAACTACCTCAGAATACCACTCCCCAAAG
JMFF009I07+           ATGTCATAATACTCAATCATTTCACTGGTAACAACTACCTCAGAATACCACTCCCCAAAG
JMFF033H09+           ATGTCATAATACTCAATCATTTCACTGGTAACAACTACCTCAGAATACCACTCCCCAAAG
                      ____________________________________________________________
consensus             ATGTCATAATACTCAATCATTTCACTGGTAACAACTACCTCAGAATACCACTCCCCAAAG
 
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JMSF045L14+           TTTTCATCTTTCTTGTAAGTAAGACCAAGACCAGTCTCTTTCTTCACTTCCTTCTTCTTC
JMFF009I07+           TTTTCATCTTTCTTGTAAGTAAGACCAAGACCAGTCTCTTTCTTCACTTCCTTCTTCTTC
JMFF033H09+           TTTTCATCTTTCTTGTAAGTAAGACCAAGACCAGTCTCTTTCTTCACTTCCTTCTTCTTC
                      ____________________________________________________________
consensus             TTTTCATCTTTCTTGTAAGTAAGACCAAGACCAGTCTCTTTCTTCACTTCCTTCTTCTTC
 
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JMSF045L14+           CCCTGAGCACTTGAAGCACTTGCACTTTTTGAATCCTTGCCACTTTTTGAATCCTTGCCA
JMFF009I07+           CCCTGAGCACTTGAAGCACTTGCACTTTTTGAATCCTTGCCACTTTTTGAATCCTTGCCA
JMFF033H09+           CCCTGAGCACTTGAAGCACTTGCACTTTTTGAATCCTTGCCACTTTTTGAATCCTTGCCA
                      ____________________________________________________________
consensus             CCCTGAGCACTTGAAGCACTTGCACTTTTTGAATCCTTGCCACTTTTTGAATCCTTGCCA
 
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JMSF045L14+           GCCATGTGGGCAACTACGCATAAAACTCCCAAGCAAACCACCTGATGAAGAAGGCGATCG
JMFF009I07+           GCCATGTGGGCAACTACGCATAAAACTCCCAAGCAAACCACCTGATGAAGAAGGCGATCG
JMFF033H09+           GCCATGTGGGCAACTACGCATAAAACTCCCAAGCAAACCACCTGATGAAGAAGGCGATCG
                      ____________________________________________________________
consensus             GCCATGTGGGCAACTACGCATAAAACTCCCAAGCAAACCACCTGATGAAGAAGGCGATCG
 
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JMSF045L14+           GCGACGGGGGAGAGGAGAAGATTCGGCGTAGCTTTTCTGCGAGGCTGCT           
JMFF009I07+           GCGACGGGGGAGAGGAGAAGATTCGGCGTAGCTTTTCTGCGAGGCTGCTGAAGTGCTAAC
JMFF033H09+           GCGACGGGGGAGAGGAGAAGATTCGGCGTAGCTTTTCTGCGAGGCTGCTGAAGTGCTAAC
                      ____________________________________________________________
consensus             GCGACGGGGGAGAGGAGAAGATTCGGCGTAGCTTTTCTGCGAGGCTGCTGAAGTGCTAAC