Contig 000182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001P07Sequence632000182 (5)ref|XP_004251586.1|3e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686675000182 (5)ref|XP_004251586.1|4e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686
JMFF032G18Sequence549000182 (5)ref|XP_004251586.1|1e-69PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686733000182 (5)ref|XP_004251586.1|7e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686
JMFN016L22Sequence606000182 (5)ref|XP_004251586.1|1e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF032G18- AGTGATTGTAGTAGCATCAACAGAGAACCCCTGTCCAGAACAACTAA
                      ____________________________________________________________
consensus AGTGATTGTAGTAGCATCAACAGAGAACCCCTGTCCAGAACAACTAA
 
. : . : . : . : . : . :
rJMFF032G18- AGCGAGCCTAGAGTAGAGCCACAGCTAGATAGATGCAATATGGGTAAACACATTACAGGG
rJMFF001P07- ATATGGGTAAACACATTACAGGG
                      ____________________________________________________________
consensus AGCGAGCCTAGAGTAGAGCCACAGCTAGATAGATGCAATATGGGTAAACACATTACAGGG
 
. : . : . : . : . : . :
rJMFF032G18- TGGTCATAAAATCATAAACGAACCATGTTCAATATAGCACCCGCTAACAGCTAATCAGAA
rJMFF001P07- TGGTCATAAAATCATAAACGAACCATGTTCAATATAGCACCCGCTAACAGCTAATCAGAA
                      ____________________________________________________________
consensus TGGTCATAAAATCATAAACGAACCATGTTCAATATAGCACCCGCTAACAGCTAATCAGAA
 
. : . : . : . : . : . :
rJMFF032G18- CCTAGATGGAACATTGAAACAAACTGATGAGTACACAGTTCCATGTATATGTTGTTTCCG
rJMFF001P07- CCTAGATGGAACATTGAAACAAACTGATGAGTACACAGTTCCATGTATATGTTGTTTCCG
JMFN016L22+ TGTTTCGG
JMFF001P07+ CCATGTATATGTTGTTTCCG
                      ____________________________________________________________
consensus CCTAGATGGAACATTGAAACAAACTGATGAGTACACAGTTCCATGTATATGTTGTTTCCG
 
. : . : . : . : . : . :
rJMFF032G18- GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
rJMFF001P07- GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
JMFN016L22+ GACACNAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
JMFF001P07+ GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
JMFF032G18+ GAAGATTTG
                      ____________________________________________________________
consensus GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
 
. : . : . : . : . : . :
rJMFF032G18- TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
rJMFF001P07- TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
JMFN016L22+ TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
JMFF001P07+ TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
JMFF032G18+ TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
                      ____________________________________________________________
consensus TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
 
. : . : . : . : . : . :
rJMFF032G18- AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
rJMFF001P07- AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
JMFN016L22+ AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
JMFF001P07+ AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
JMFF032G18+ AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
                      ____________________________________________________________
consensus AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
 
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rJMFF032G18- TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
rJMFF001P07- TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
JMFN016L22+ TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
JMFF001P07+ TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
JMFF032G18+ TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
                      ____________________________________________________________
consensus TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
 
. : . : . : . : . : . :
rJMFF032G18- TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
rJMFF001P07- TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
JMFN016L22+ TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
JMFF001P07+ TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
JMFF032G18+ TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
                      ____________________________________________________________
consensus TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
 
. : . : . : . : . : . :
rJMFF032G18- CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCGCGAGAGGAG
rJMFF001P07- CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
JMFN016L22+ CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
JMFF001P07+ CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
JMFF032G18+ CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCGCGAGAGGAG
                      ____________________________________________________________
consensus CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
 
. : . : . : . : . : . :
rJMFF032G18- CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
rJMFF001P07- CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
JMFN016L22+ CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
JMFF001P07+ CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
JMFF032G18+ CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
                      ____________________________________________________________
consensus CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
 
. : . : . : . : . : . :
rJMFF032G18- TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
rJMFF001P07- TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
JMFN016L22+ TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
JMFF001P07+ TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
JMFF032G18+ TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
                      ____________________________________________________________
consensus TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
 
. : . : . : . : . : . :
rJMFF032G18- GATTTAAAAGAGATGAATGGAGAGGA
rJMFF001P07- GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTA
JMFN016L22+ GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
JMFF001P07+ GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
JMFF032G18+ GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
                      ____________________________________________________________
consensus GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
 
. : . : . : . : . : . :
JMFN016L22+ GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGAC
JMFF001P07+ GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGACAATAGCCTACC
JMFF032G18+ GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGACAATAGCCTACCAGAT
                      ____________________________________________________________
consensus GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGACAATAGCCTACCAGAT