Contig 000144:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026M12Sequence520000144 (3)ref|XP_009601706.1|2e-26PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Nicotiana tomentosiformis]754005433 (3)ref|XP_006350542.1|8e-135PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Solanum tuberosum]
JMFF031P23Sequence555000144 (3)ref|XP_009601706.1|7e-35PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Nicotiana tomentosiformis]636005433 (3)ref|XP_004502650.1|7e-107PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cicer arietinum]
JMSF007N18Sequence282000144 (3)781005433 (3)ref|XP_006350542.1|2e-150PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF031P23+                                                        TTGTCTGCAAGTCGG
                      ____________________________________________________________
consensus                                                          TTGTCTGCAAGTCGG
 
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JMFF031P23+           ACATCGGTTGTGCACCTTCGCTTTACAGGTTGAACAGAGCGTGTGCCCATTGTGGCACTG
JMFF026M12+                               CTTTACAGGTTGAACAGAGCGTGTGCCCATTGTGGCACTG
                      ____________________________________________________________
consensus             ACATCGGTTGTGCACCTTCGCTTTACAGGTTGAACAGAGCGTGTGCCCATTGTGGCACTG
 
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JMFF031P23+           ATGAATGGGAGGGTACATAGAATTTGTGCAAACGGGGCATTCCAGCAATTCATGGACACT
JMFF026M12+           ATGAATGGGAGGGTACATAGAATTTGTGCAAACGGGGCATTCCAGCAATTCATGGACACT
                      ____________________________________________________________
consensus             ATGAATGGGAGGGTACATAGAATTTGTGCAAACGGGGCATTCCAGCAATTCATGGACACT
 
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JMFF031P23+           AGTAGGGGCAATTGCGGCAGGCAACAAATTACTCTGCGGCGGCTTAGCGGAGGAGTTGTA
JMFF026M12+           AGTAGGGGCAATTGCGGCAGGCAACAAATTACTCTGCGGCGGCTTAGCGGAGGAGTTGTA
                      ____________________________________________________________
consensus             AGTAGGGGCAATTGCGGCAGGCAACAAATTACTCTGCGGCGGCTTAGCGGAGGAGTTGTA
 
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JMFF031P23+           CTGGTGGTGGTGGTGGTGGTTGGGATGCGGACGCTGAGACGACGGGATCTCTTCCTCCTC
JMFF026M12+           CTGGTGGTGGTGGTGGTGGTTGGGATGCGGACGCTGAGACGACGGGATCTCTTCCTCCTC
                      ____________________________________________________________
consensus             CTGGTGGTGGTGGTGGTGGTTGGGATGCGGACGCTGAGACGACGGGATCTCTTCCTCCTC
 
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JMFF031P23+           CACGCCGCCGTCCGACGACGATACGCACTCGATGCTTTCAATCTCCATTTTATACATACA
JMSF007N18+                         ACGACGATACGCACTCGATGCTTTCAATCTCCATTTTATACATACA
JMFF026M12+           CACGCCGCCGTCCGACGACGATACGCACTCGATGCTTTCAATCTCCATTTTATACATACA
                      ____________________________________________________________
consensus             CACGCCGCCGTCCGACGACGATACGCACTCGATGCTTTCAATCTCCATTTTATACATACA
 
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JMFF031P23+           TACACATGCGTCTCTACGAAAATTGTTTCTCCGAATTGGGAATTCGAGGGAAAAAAACAA
JMSF007N18+           TACACATGCGTCTCTACGAAAATTGTTTCTCCGAATTGGGAATTCGAGGGAAAAAAACAA
JMFF026M12+           TACACATGCGTCTCTACGAAAATTGTTTCTCCGAATTGGGAATTCGAGGGAAAAAAACAA
                      ____________________________________________________________
consensus             TACACATGCGTCTCTACGAAAATTGTTTCTCCGAATTGGGAATTCGAGGGAAAAAAACAA
 
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JMFF031P23+           AAAACAAACAGAATTGTTTTTTTTGTTTTTGTTCGAATTTCTTTCAATTTCTTTTGGGTT
JMSF007N18+           AAAACAAACAGAATTGTTTTTTTTGTTTTTGTTTGAATTTCTTTCAATTTCTTTTGGGTT
JMFF026M12+           AAAACAAACAGAATTGTTTTTTTTGTTTTTGTTCGAATTTCTTTCAATTTCTTTTGGGTT
                      ____________________________________________________________
consensus             AAAACAAACAGAATTGTTTTTTTTGTTTTTGTTCGAATTTCTTTCAATTTCTTTTGGGTT
 
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JMFF031P23+           CTTCTTTGATCTGGGAAAACAATGGAAAGAAGAAGAATCAAAAGAATTTGAGAGAAAACA
JMSF007N18+           CTTCTTTGATCTGGGAAAACAATGGAAAGAAGAAGAATCAAAAGAATTTGAAAGAAAACA
JMFF026M12+           CTTCTTTGATCTGGGAAAACAATGGAAAGAAGAAGAATCAAAAGAATTTGAGAGAAAACA
                      ____________________________________________________________
consensus             CTTCTTTGATCTGGGAAAACAATGGAAAGAAGAAGAATCAAAAGAATTTGAGAGAAAACA
 
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JMFF031P23+           AAGAGAACGACAGAGAGAGAGAGAAAGAGTGCGCGCGATTCCGAGGAACCCAACC     
JMSF007N18+           AAGAGAACGACAGAGAGAGAGAGAAAGAGTGCGCGCGATTCCGAGGAACCCAACC     
JMFF026M12+           AAGAGAACGACAGAGAGAGAGAGAAAGAGTGCGCGCGATTCCGAGGAACCCAACCGGAAC
                      ____________________________________________________________
consensus             AAGAGAACGACAGAGAGAGAGAGAAAGAGTGCGCGCGATTCCGAGGAACCCAACCGGAAC