clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF020M21 | Sequence | 477 | 000109 (3) | 714 | 002576 (2) | ref|XP_009760578.1| | 2e-96 | PREDICTED: acyltransferase-like protein At1g54570, chloroplastic [Nicotiana syl | |||
JMFS020F09 | Sequence | 468 | 000109 (3) | gb|KDO53347.1| | 3e-15 | hypothetical protein CISIN_1g004396mg [Citrus sinensis] | |||||
JMSF026L16 | Sequence | 636 | 000109 (3) | ref|XP_011081015.1| | 9e-41 | PREDICTED: acyltransferase-like protein At1g54570, chloroplastic [Sesamum indic | 752 | 002576 (2) | ref|XP_009760578.1| | 7e-137 | PREDICTED: acyltransferase-like protein At1g54570, chloroplastic [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
JMSF026L16+ CTTATGG
____________________________________________________________
consensus CTTATGG
. : . : . : . : . : . :
JMSF026L16+ TGCAATGTGAGACNTAATCCTGTTCCATCGGCTCCAGGTAAGAAGAACAGAGCAGGTGAG
____________________________________________________________
consensus TGCAATGTGAGACNTAATCCTGTTCCATCGGCTCCAGGTAAGAAGAACAGAGCAGGTGAG
. : . : . : . : . : . :
JMFS020F09+ AGGTCCACCAACAGGT
JMSF026L16+ TCTTTTAAATGAGGAGCACAAGAGANTGGTGCAAACCACCTTGGAGGTCCACCATCAGGC
____________________________________________________________
consensus TCTTTTAAATGAGGAGCACAAGAGANTGGTGCAAACCACCTTGGAGGTCCACCATCAGGT
. : . : . : . : . : . :
JMFS020F09+ TCAATAATCTATGTGATTAATACAAGATAATCCTTTACAGTGTTAGTACCATATCAATAA
JMSF026L16+ TCAATAATCTCTTTGGNTAATTCAAGATAATCCTTCACAGTTTGAGTCCCATATCCATCA
____________________________________________________________
consensus TCAATAATCTCTTTGGTTAATTCAAGATAATCCTTTACAGTTTTAGTCCCATATCCATCA
. : . : . : . : . : . :
JMFS020F09+ TCCCAGTAAACTGCCATTTTCTGTTGCCCACAATCTTTCTTCTTGTTCTCTTCCAGAACA
JMSF026L16+ TCCCAGTAAACCTCCAACTTTTCTTGACCACAATCCTTCTTCTTCTTCTCCTCCCTAACA
____________________________________________________________
consensus TCCCAGTAAACTTCCATTTTTTGTTGCCCACAATCTTTCTTCTTGTTCTCTTCCCTAACA
. : . : . : . : . : . :
JMFS020F09+ ATAACACGTGACCTCAAATACCCATTTCCCACATCAATAGAAGCCCAACCACTTCTCCCC
JMSF026L16+ CTAACACCTGACCTCAAATACCCATTTCCCACATCAATTGAAGCCCTACCACTTCTCCCC
____________________________________________________________
consensus CTAACACGTGACCTCAAATACCCATTTCCCACATCAATTGAAGCCCTACCACTTCTCCCC
. : . : . : . : . : . :
JMFS020F09+ TTGTCCCCCACAGGTGAAACACCATTTACTCCAACAGAATCAGACAGCATATATGATGAA
JMSF026L16+ TTCTCCCCCACAGGTGAAACACCATTTACTCCAACAGAATCAGACAACAAATCTGCTGAA
JMFF020M21+ TCCCCCACAGGTGAAACACCATTTACTCCAACAGAATCAGACAACAAATCTGCTGAA
____________________________________________________________
consensus TTGTCCCCCACAGGTGAAACACCATTTACTCCAACAGAATCAGACAACAAATCTGCTGAA
. : . : . : . : . : . :
JMFS020F09+ TCCCCCCGGCTCGCTATACAATGAACACTAGTTGTAGGTCGCAGGTTAGACTCCGAATTC
JMSF026L16+ TCCCCCCGGCTCGCTATACACTGAATACTAGTTCTAGGTTGCAGCTTAGACTCCAAATTC
JMFF020M21+ TCCCCCCGGCTCGCTATACACTGAATACTAGTTCTAGGTTGCAGCTTAGACTCCAAATTC
____________________________________________________________
consensus TCCCCCCGGCTCGCTATACACTGAATACTAGTTCTAGGTTGCAGCTTAGACTCCAAATTC
. : . : . : . : . : . :
JMFS020F09+ AAATAAAAGCTAGGTTATATGCTTGAAGCTCTGCACAATTAAACCCATGATTTTTGATAA
JMSF026L16+ AAAGAAAAACAAGGTGATAT-CTTGAAGCTCTGCACAACTAAAGCCATGATTTTTGAAAA
JMFF020M21+ AAAGAAAAACAAGGTGATAT-CTTGAAGCTCTGCACAACTAAAGCCATGATTTTTGAAAA
____________________________________________________________
consensus AAAGAAAAACAAGGTGATAT-CTTGAAGCTCTGCACAACTAAAGCCATGATTTTTGAAAA
. : . : . : . : . : . :
JMFS020F09+ CCAATCTTTTCAAAC
JMSF026L16+ CCAATCTTTTCAAACTGAAGATAAAATGGGAGAGGATGAACTCTCAAGAATGAAATCATG
JMFF020M21+ CCAATCTTTTCAAACTGAAGATAAAATGGGAGAGGATGAACTCTCAAGAATGAAATCATG
____________________________________________________________
consensus CCAATCTTTTCAAACTGAAGATAAAATGGGAGAGGATGAACTCTCAAGAATGAAATCATG
. : . : . : . : . : . :
JMSF026L16+ AATATGCCAAAATTGAAGCAAGCTCTCAACCAGAGCCTTTCGAAAATGTGATTTTCTGTC
JMFF020M21+ AATATGCCAAAATTGAAGCAAGCTCTCAACCAGAGCCTTTCGAAAATGTGATTTTCTGTC
____________________________________________________________
consensus AATATGCCAAAATTGAAGCAAGCTCTCAACCAGAGCCTTTCGAAAATGTGATTTTCTGTC
. : . : . : . : . : . :
JMSF026L16+ TGAACTAAATTAGAAAGTCAGGGCTGCCC
JMFF020M21+ TGAACTAAATTAGAAAGTCAGGGCTGCCCAGCACATGGAACTTTTTTCTCAAGTGTTTTA
____________________________________________________________
consensus TGAACTAAATTAGAAAGTCAGGGCTGCCCAGCACATGGAACTTTTTTCTCAAGTGTTTTA
. : . : . : . : . : . :
JMFF020M21+ AACCACAAAAAGAAAGGTGAAAGTGAAATCCCAGAATTTTGTGATACCTCAAAGTTTAAA
____________________________________________________________
consensus AACCACAAAAAGAAAGGTGAAAGTGAAATCCCAGAATTTTGTGATACCTCAAAGTTTAAA
. : . : . : . : . : . :
JMFF020M21+ GATTTATAGGAATATGAACAAGCAAGAAACAGACTGTGTTTGTGTGTGGATCCAAAACAT
____________________________________________________________
consensus GATTTATAGGAATATGAACAAGCAAGAAACAGACTGTGTTTGTGTGTGGATCCAAAACAT