Contig 000090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017P14Sequence520000090 (5)ref|XP_002523830.1|1e-7840S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso709000090 (5)ref|XP_002523830.1|2e-7740S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso
JMFN025M06Sequence638000090 (5)ref|XP_002523830.1|2e-8040S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso
JMFN037F09Sequence606000090 (5)ref|XP_002523830.1|1e-8040S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso
JMFN039B02Sequence629000090 (5)ref|XP_002523830.1|3e-8040S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN037F09+ GAAGTTT
                      ____________________________________________________________
consensus GAAGTTT
 
. : . : . : . : . : . :
JMFN037F09+ TTGGTGAGAGTGAGCTACAAAAACGTCTAAACATTAAAGTAAAACAAAAACTCTTCCAGG
                      ____________________________________________________________
consensus TTGGTGAGAGTGAGCTACAAAAACGTCTAAACATTAAAGTAAAACAAAAACTCTTCCAGG
 
. : . : . : . : . : . :
JMFN025M06+ GGAATTACAGCCTCCTTCCCCTTC
JMFN039B02+ GGAATTACAGCCTCCTTCCCCTTC
JMFN037F09+ ACTTGAAGTTGCAACCATTTGGAGAGAGTATAAAATGGAATTACAGCCTCCTTCCCCTTC
rJMFF017P14- GGAATTACAGCCTCCTTCCCCTTC
JMFF017P14+ TGAGAGAGTATAAAATGGAATTACAGCCTCCTTCCCCTTC
                      ____________________________________________________________
consensus ACTTGAAGTTGCAACCATTTTGAGAGAGTATAAAATGGAATTACAGCCTCCTTCCCCTTC
 
. : . : . : . : . : . :
JMFN025M06+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
JMFN039B02+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
JMFN037F09+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
rJMFF017P14- TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
JMFF017P14+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
                      ____________________________________________________________
consensus TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
 
. : . : . : . : . : . :
JMFN025M06+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
JMFN039B02+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
JMFN037F09+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
rJMFF017P14- TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
JMFF017P14+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
                      ____________________________________________________________
consensus TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
 
. : . : . : . : . : . :
JMFN025M06+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
JMFN039B02+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
JMFN037F09+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
rJMFF017P14- TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
JMFF017P14+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
                      ____________________________________________________________
consensus TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
 
. : . : . : . : . : . :
JMFN025M06+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
JMFN039B02+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
JMFN037F09+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
rJMFF017P14- TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
JMFF017P14+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
                      ____________________________________________________________
consensus TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
 
. : . : . : . : . : . :
JMFN025M06+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
JMFN039B02+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
JMFN037F09+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
rJMFF017P14- TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTATCTCCCAGATAAAT
JMFF017P14+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTATCTCCCAGATAAAT
                      ____________________________________________________________
consensus TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
 
. : . : . : . : . : . :
JMFN025M06+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGCAACACCAAAAACTA
JMFN039B02+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGCAACACCAAAAACTA
JMFN037F09+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGCAACACCAAAAACTA
rJMFF017P14- CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGGAACACCAAAAACTA
JMFF017P14+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGGAACACCAAAAACTA
                      ____________________________________________________________
consensus CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGGAACACCAAAAACTA
 
. : . : . : . : . : . :
JMFN025M06+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
JMFN039B02+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
JMFN037F09+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
rJMFF017P14- ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
JMFF017P14+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
                      ____________________________________________________________
consensus ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
 
. : . : . : . : . : . :
JMFN025M06+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTT
JMFN039B02+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAG
JMFN037F09+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTT
rJMFF017P14- TTCTCTTAGACATGGCT
JMFF017P14+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTTC
                      ____________________________________________________________
consensus TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTTC