Contig 000018:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005G12Sequence426000018 (2)ref|XP_002522038.1|2e-05Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gb|EEF4745010973 (2)ref|XP_009779240.1|1e-51PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]
JMFF028K13Sequence534000018 (2)ref|XP_002522038.1|3e-19Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gb|EEF4699010973 (2)ref|XP_006367082.1|1e-50PREDICTED: receptor-like protein kinase HAIKU2-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF028K13+                 CTCAAGAGAGCAAACCGAATCAAACGAAACAATCCCCGACAGCTCTTCTTGTGG
                      ____________________________________________________________
consensus                   CTCAAGAGAGCAAACCGAATCAAACGAAACAATCCCCGACAGCTCTTCTTGTGG
 
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JMFF028K13+           AAGGTTGATTTCCTTAACCATTCCGTTAGGATCACAGACTATCCCCGTGAAGTTGCACAA
JMFF005G12+                                                                 GCACAA
                      ____________________________________________________________
consensus             AAGGTTGATTTCCTTAACCATTCCGTTAGGATCACAGACTATCCCCGTGAAGTTGCACAA
 
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JMFF028K13+           GCTATTCCGATGCGTCCATGAATCAAACACGCGCGAACTTTGATCTTTCAGGGACGACTT
JMFF005G12+           GCTATTCCGATGCGTCCATGAATCAAACACGCGCGAACTTTGATCTTTCAGGGACGACTT
                      ____________________________________________________________
consensus             GCTATTCCGATGCGTCCATGAATCAAACACGCGCGAACTTTGATCTTTCAGGGACGACTT
 
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JMFF028K13+           GAACCGCATAAGTAGTTGAAAATCGTCAGCTCTGGACTGCAAAACCATACCGAGAGATAG
JMFF005G12+           GAACCGCATAAGTAGTTGAAAATCGTCAGCTCTGGACTGCAAAACCATACCGAGAGATAG
                      ____________________________________________________________
consensus             GAACCGCATAAGTAGTTGAAAATCGTCAGCTCTGGACTGCAAAACCATACCGAGAGATAG
 
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JMFF028K13+           CAGAAGCATGACAGCCCTCGGAAATAGCCATCGCCGGAAAAAACTGCCCGCCGGCATTTC
JMFF005G12+           CAGAAGCATGACAGCCCTCGGAAATAGCCATCGCCGGAAAAAACTGCCCGCCGGCATTTC
                      ____________________________________________________________
consensus             CAGAAGCATGACAGCCCTCGGAAATAGCCATCGCCGGAAAAAACTGCCCGCCGGCATTTC
 
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JMFF028K13+           GGGAATGGATGGAGTGAGAGAGATAAGGTTTGATACGTCGGTGAAATTCCAGAACGGAAT
JMFF005G12+           GGGAATGGATGGAGTGAGAGAGATAAGGTTTGATACGTCGGTGAAATTCCAGAACGGAAT
                      ____________________________________________________________
consensus             GGGAATGGATGGAGTGAGAGAGATAAGGTTTGATACGTCGGTGAAATTCCAGAACGGAAT
 
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JMFF028K13+           CAAGAAAAGAACCATTCAATTTTGGCTGAGGTTGTTAATTGATGGCGGGTGGCGGCCATG
JMFF005G12+           CAAGAAAAGAACCATTCAATTTTGGCTGAGGTTGTTAATTGATGGCGGGTGGCGGCCATG
                      ____________________________________________________________
consensus             CAAGAAAAGAACCATTCAATTTTGGCTGAGGTTGTTAATTGATGGCGGGTGGCGGCCATG
 
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JMFF028K13+           ACTTGTGACGAAGTTTCACGTACACTACCCATTTTTTAGTAATTTGCATGTGACAAAATG
JMFF005G12+           ACTTGTGACGAAGTTTCACGTACACTACCCATTTTTTAGTAATTTGCATGTGACAAAATG
                      ____________________________________________________________
consensus             ACTTGTGACGAAGTTTCACGTACACTACCCATTTTTTAGTAATTTGCATGTGACAAAATG
 
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JMFF028K13+           AACATTGTGGGCAAAATGGATGTATGCTTTCAATTCTCTTACATACCAGCTGACATTA  
JMFF005G12+           AACATTGTGGGCAAAATGGATGTATGCTTTCAATTCTCTTACATACCAGCTGACATTATC
                      ____________________________________________________________
consensus             AACATTGTGGGCAAAATGGATGTATGCTTTCAATTCTCTTACATACCAGCTGACATTATC