Contig 000011:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003O15Sequence486000011 (2)773003937 (2)ref|XP_009772108.1|2e-110PREDICTED: scarecrow-like protein 18 [Nicotiana sylvestris]
JMFF033J16Sequence504000011 (2)757003937 (2)ref|XP_009772108.1|2e-108PREDICTED: scarecrow-like protein 18 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF033J16+                                               CTCGAAAAACCTACCATAACATTT
JMFF003O15+                                                                 ACATTT
                      ____________________________________________________________
consensus                                                 CTCGAAAAACCTACCATAACATTT
 
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JMFF033J16+           CAAGATCTCGAAAGACGCAGAAGAAAATGGAGTCGTCTGGTGAGGTAGTTTGGGCTCAGA
JMFF003O15+           CAAGATCTCGAAAGACGCAGAAGAAAATGGAGTCGTCTGGTGAGGTAGTTTGGGCTCAGA
                      ____________________________________________________________
consensus             CAAGATCTCGAAAGACGCAGAAGAAAATGGAGTCGTCTGGTGAGGTAGTTTGGGCTCAGA
 
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JMFF033J16+           AACTTCAGGATTATTTGGGGAAGCTAAAGGCATTTGATTTTGATCTTCAATAAGATGTTC
JMFF003O15+           AACTTCAGGATTATTTGGGGAAGCTAAAGGCATTTGATTTTGATCTTCAATAAGATGTTC
                      ____________________________________________________________
consensus             AACTTCAGGATTATTTGGGGAAGCTAAAGGCATTTGATTTTGATCTTCAATAAGATGTTC
 
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JMFF033J16+           GATCTTTTTAGCTCCAGCAAAGAGGGAGTCAAAATCATCATCACATTCTTCCATTTCAAA
JMFF003O15+           GATCTTTTTAGCTCCAGCAAAGAGGGAGTCAAAATCATCATCACATTCTTCCATTTCAAA
                      ____________________________________________________________
consensus             GATCTTTTTAGCTCCAGCAAAGAGGGAGTCAAAATCATCATCACATTCTTCCATTTCAAA
 
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JMFF033J16+           CCAATCATTATTATCATCTTTGCTGCTGTTTAGTTCATCATTCACACTTCCTTTACGATG
JMFF003O15+           CCAATCATTATTATCATCTTTGCTGCTGTTTAGTTCATCATTCACACTTCCTTTACGATG
                      ____________________________________________________________
consensus             CCAATCATTATTATCATCTTTGCTGCTGTTTAGTTCATCATTCACACTTCCTTTACGATG
 
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JMFF033J16+           AAGATGACGATCGTGATTGAAAGGAGCGGAGGGGAAGGAGACACTAGTCATCGTTCTCTG
JMFF003O15+           AAGATGACGATCGTGATTGAAAGGAGCGGAGGGGAAGGAGACACTAGTCATCGTTCTCTG
                      ____________________________________________________________
consensus             AAGATGACGATCGTGATTGAAAGGAGCGGAGGGGAAGGAGACACTAGTCATCGTTCTCTG
 
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JMFF033J16+           CAACTACAACGATCGACTAACAACACATTGTATGTATAATGACGAGAATTATGAAGTTTT
JMFF003O15+           CAACTACAACGATCGACTAACAACACATTGTATGTATAATGACGAGAATTATGAAGTTTT
                      ____________________________________________________________
consensus             CAACTACAACGATCGACTAACAACACATTGTATGTATAATGACGAGAATTATGAAGTTTT
 
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JMFF033J16+           CTTAATGATGTTATTAGCCACATAAAGCCAAACAAGCTATGGTTTCTAGTCCATGGAAGG
JMFF003O15+           CTTAATGATGTTATTAGCCACATAAAGCCAAACAAGCTATGGTTTCTAGTCCATGGAAGG
                      ____________________________________________________________
consensus             CTTAATGATGTTATTAGCCACATAAAGCCAAACAAGCTATGGTTTCTAGTCCATGGAAGG
 
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JMFF033J16+           ACATCTATTTTTGGGAAAACTTAAGCTAGCAGCCTATGCATGCAAATACATTTTGAAATT
JMFF003O15+           ACATCTATTTTTGGGAAAACTTAAGCTAGCAGCCTATGCATGCAAATACATTTTGAAATT
                      ____________________________________________________________
consensus             ACATCTATTTTTGGGAAAACTTAAGCTAGCAGCCTATGCATGCAAATACATTTTGAAATT