| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002K17 | Sequence | 323 | 000008 (10) | 187 | 005372 (9) | ||||||
| JMFF013B11 | Sequence | 294 | 000008 (10) | ref|XP_006345386.1| | 8e-08 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | 288 | 005372 (9) | |||
| JMFF017N12 | Sequence | 583 | 000008 (10) | ref|XP_006345386.1| | 1e-37 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | 747 | 005372 (9) | ref|XP_006345385.1| | 1e-22 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan |
| JMFF035N20 | Sequence | 440 | 000008 (10) | ref|XP_010067777.1| | 6e-10 | PREDICTED: zinc finger CCCH domain-containing protein 53 [Eucalyptus grandis] r | 277 | 005372 (9) | |||
| JMFS021D02 | Sequence | 616 | 000008 (10) | ref|XP_006345386.1| | 2e-37 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | |||||
| JMFS047A05 | Sequence | 628 | 000008 (10) | ref|XP_006345386.1| | 3e-61 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | |||||
| JMFS065E09 | Sequence | 627 | 000008 (10) | ref|XP_006345386.1| | 8e-37 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | |||||
| JMFS065F04 | Sequence | 612 | 000008 (10) | ref|XP_006345386.1| | 4e-36 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | |||||
| JMFS161C02 | Sequence | 560 | 000008 (10) | ref|XP_006345386.1| | 8e-38 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | |||||
| JMSF029M13 | Sequence | 662 | 000008 (10) | ref|XP_006345386.1| | 6e-52 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | 699 | 005372 (9) | ref|XP_006345385.1| | 3e-22 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan |
This contig is upended
. : . : . : . : . : . :
JMFS047A05+ GGTGGTTTGGGTAGAAAATGTCGGGGTTTTTGG
____________________________________________________________
consensus GGTGGTTTGGGTAGAAAATGTCGGGGTTTTTGG
. : . : . : . : . : . :
JMFS047A05+ CCCCCAAAGTCGGCGACCCATCGTTGAGAAACGAGAGCTGGTCCTGCAGCTGAAACTCGT
JMSF029M13+ CATCGTTGAGAAACGAGAGCTGGTCCTGCAGCTGAAACTCGT
____________________________________________________________
consensus CCCCCAAAGTCGGCGACCCATCGTTGAGAAACGAGAGCTGGTCCTGCAGCTGAAACTCGT
. : . : . : . : . : . :
JMFS047A05+ CGATCAAATCCACCTCCCCGCCGCCGTAAAACGGCGGCGCGGCGGAGTTCATGGAAGACG
JMSF029M13+ CGATCAAATCCACCTCCCCGCTGCCGTAAAACGGCGGCGCGGCGGAGTTCATGGAAGACG
____________________________________________________________
consensus CGATCAAATCCACCTCCCCGCTGCCGTAAAACGGCGGCGCGGCGGAGTTCATGGAAGACG
. : . : . : . : . : . :
JMFS047A05+ ACAGAGAACTAACTCCATTAGCAGTAGGACTGGGACTAACCATCCCCTCCGGGCTCTGAA
JMSF029M13+ ACAGAGAACTAACTCCATTAGCAGTAGGACTGGGACTAACCATCCCCTCCGGGCTCTGAA
JMFS065E09+ GTAGGACTGGGACTAACCATCCCCTCCGGGCTCTGAA
____________________________________________________________
consensus ACAGAGAACTAACTCCATTAGCAGTAGGACTGGGACTAACCATCCCCTCCGGGCTCTGAA
. : . : . : . : . : . :
JMFS047A05+ ACTCCGAGAAGCTGGAATTAGCCCAAGAAGAAGAAGCATTCGACTGGGTATTTATGCTGA
JMFF017N12+ TCCGAGAAGCTGGAATTAGCCCAAGAAGAAGAAGCATTCGACTGGGTATTTATGCTGA
JMFS021D02+ AGCTGGAATTAGCCCAAGAAGAAGAAGCATTCGACTGGGTATTTATGCTGA
JMSF029M13+ ACTCCGAGAAGCTGGAATTAGCCCAAGAAGAAGAAGCATTCGACTGGGTATTTATGCTGA
JMFS065E09+ ACTCCGAGAAGCTGGAATTAGCCCAAGAAGAAGAAGCATTCGACTGGGTATTTATGCTGA
JMFS161C02+ AGCTGGAATTAGCCCAAGAAGAAGAAGCATTCGACTGGGTATTTATGCTGA
JMFS065F04+ TGA
____________________________________________________________
consensus ACTCCGAGAAGCTGGAATTAGCCCAAGAAGAAGAAGCATTCGACTGGGTATTTATGCTGA
. : . : . : . : . : . :
JMFS047A05+ GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
JMFF017N12+ GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
JMFS021D02+ GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
JMSF029M13+ GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
JMFS065E09+ GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
JMFS161C02+ GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
JMFS065F04+ GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
____________________________________________________________
consensus GCGGAGAAGGAAGATTAACGCCGCCATGAATCCTCCCAGAGCCGCCGGAAGAAGCAGAGT
. : . : . : . : . : . :
JMFS047A05+ TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
JMFF017N12+ TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
JMFS021D02+ TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
JMSF029M13+ TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
JMFS065E09+ TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
JMFS161C02+ TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
JMFS065F04+ TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
____________________________________________________________
consensus TCTGCCGGGAAAAAGGAACAGAAATCGAATTCCCAAACGGAGAAGGCGACGAAGGAGTGG
. : . : . : . : . : . :
JMFS047A05+ ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
JMFF017N12+ ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
JMFS021D02+ ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
JMSF029M13+ ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
JMFS065E09+ ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
JMFS161C02+ ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
JMFS065F04+ ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
____________________________________________________________
consensus ACGGAGAGTTGGGAGACAACCCAAGCTCTATCTTCGTCTTCACAATCACAGATTGAAGCA
. : . : . : . : . : . :
JMFS047A05+ ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
JMFF017N12+ ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
JMFS021D02+ ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
JMFF013B11+ GTATCAGCA
JMSF029M13+ ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
JMFS065E09+ ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
JMFS161C02+ ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
JMFS065F04+ ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
JMFF035N20+ CCCATGATCCTGTATCAGCA
____________________________________________________________
consensus ATGACTCCGGCCCAAAAGCCAGCCGGATCATCTCCTTCTCCCCATGATCCTGTATCAGCA
. : . : . : . : . : . :
JMFS047A05+ AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMFF017N12+ AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMFS021D02+ AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMFF013B11+ AAAGCCCCATGATTTTAGACGCATTTTATGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMSF029M13+ AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMFS065E09+ AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMFS161C02+ AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMFS065F04+ AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
JMFF035N20+ AAAGCCCCATGATTTTAGACGCATTTTTTGGGTCAAGACTTTGGATCCTNTGAAAAACCC
____________________________________________________________
consensus AAAGCCCCATGATTTTAGACGCATTTTCTGGGTCAAGACTTTGGATCCTCTGAAAAACCA
. : . : . : . : . : . :
JMFS047A05+ CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCAC
JMFF017N12+ CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
JMFS021D02+ CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
JMFF013B11+ CCTNTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
JMSF029M13+ CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
JMFS065E09+ CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
JMFS161C02+ CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
JMFS065F04+ CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
JMFF035N20+ CCNTTGTTGCTTCATATGCATCCATTTTNTTTTTGGGNNGGNAGCAATATTCCACTCCAA
JMFF002K17+ GGTAGCAATATTCCACTCCAA
____________________________________________________________
consensus CCTTTGTTGCTTCATATGCATCCATTTTCTTTCTGGGTTGGTAGCAATATTCCACTCCAA
. : . : . : . : . : . :
JMFF017N12+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGCTAAGT
JMFS021D02+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGCTAAGT
JMFF013B11+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAANTAAGCAAAGNTAAGT
JMSF029M13+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGCTAAGT
JMFS065E09+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGCTAAGT
JMFS161C02+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGCTAAGT
JMFS065F04+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGCTAAGT
JMFF035N20+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGNTAAGT
JMFF002K17+ CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGNTAAGT
____________________________________________________________
consensus CCCTCCAAACCCTTCTCTCTCTCTCTCTTTCTTCCTCGCAAGAACTAAGCAAAGCTAAGT
. : . : . : . : . : . :
JMFF017N12+ TACCCTTTAACCTCTCC
JMFS021D02+ TACCCTTTAACCTCTCC
JMFF013B11+ TACCCTTTAACCTCTCC
JMSF029M13+ TACCCTTTAACCTCTCCCT
JMFS065E09+ TACCCTTTAACCTCTCCCTGCAAAAAACAGCCCAGAAAA
JMFS161C02+ TACCCTTTAACCTCTCC-----TACAAAAGCCAAACCACCGCCTCCTCCTTTGTATGCAG
JMFS065F04+ TACCCTTTAACCTCTCCCCATTGAAGATCTGCACACAAAATCTTACACCTTTGACCAGAA
JMFF035N20+ TACCCTTTAACCTCTCCCCATTGAAGATNTGCACACAAAATNTTACNCCTTTGACCAGAA
JMFF002K17+ TACCCTTTAACCTCTCCCCATTGAAGATCTGCACACAAAATNTTACACCTTTGACCAGAA
____________________________________________________________
consensus TACCCTTTAACCTCTCCCCATTGAAGATCTGCACACAAAATCTTACACCTTTGACCAGAA
. : . : . : . : . : . :
JMFS161C02+ TGGTGGTAGCAGAAGCAGCAGCCTGCACAAGTAG
JMFS065F04+ AAGAAACAA-TTTTTTTTTTCTCTCAAGATAAACAGAAGAAGCTGCAGACCATAACCCCT
JMFF035N20+ AAGAAACAATTTTTTTTTTTCTCTCAAGATAAACAGAAGAAGCTGCAGACCATAACCCCT
JMFF002K17+ AAGAAACAA-TTTTTTTTTTCTCTCAAGATAAACAGAAGAAGCTGCAGACCATAACCCCT
____________________________________________________________
consensus AAGAAACAA-TTTTTTTTTTCTCTCAAGATAAACAGAAGAAGCTGCAGACCATAACCCCT
. : . : . : . : . : . :
JMFS065F04+ TCTTTTTCTTTCCCAAACACCCCTATAATTTGCAGGTTTCTTTCAATTCCCAACGAGAGA
JMFF035N20+ TCTTTTTCTTTCCCAAACACCCCTATAATTTGCAGGTTTCTTTCAATTCCCAACGAGAGA
JMFF002K17+ TCTTTTTCTTTCCCAAACACCCCTATAATTTGCAGGTTTCTTTCAATTCCCAACGAGAGA
____________________________________________________________
consensus TCTTTTTCTTTCCCAAACACCCCTATAATTTGCAGGTTTCTTTCAATTCCCAACGAGAGA
. : . : . : . : . : . :
JMFS065F04+ GAGAGAGAGA
JMFF035N20+ GAGAGAGAGAGGGGGGCTATGGAACTTACTACAAAAGCCAAACCACCGCCTCCTCCTTTT
JMFF002K17+ GAGAGAGAGAGGGGGGCTATGGAACTTACTACAAAAGCCAAACCACCGCCTCCTCCTTTT
____________________________________________________________
consensus GAGAGAGAGAGGGGGGCTATGGAACTTACTACAAAAGCCAAACCACCGCCTCCTCCTTTT