Contig 000005:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001M08Sequence591000005 (4)ref|XP_006339954.1|89.0PREDICTED: uncharacterized protein LOC102588951 [Solanum tuberosum]
JMFN025K15Sequence547000005 (4)ref|XP_006339954.1|89.0PREDICTED: uncharacterized protein LOC102588951 [Solanum tuberosum]
JMSF028M11Sequence581000005 (4)ref|XP_006339954.1|89.0PREDICTED: uncharacterized protein LOC102588951 [Solanum tuberosum]534000005 (4)ref|XP_006339954.1|89.0PREDICTED: uncharacterized protein LOC102588951 [Solanum tuberosum]

Alignment

This contig is upended


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JMFN025K15+                                                                AAAATAA
JMSF028M11+                                                         TTTTAATAAAATAA
                      ____________________________________________________________
consensus                                                           TTTTAATAAAATAA
 
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JMFN025K15+           TAAATTCTACATTAAGTTTTCGCAATAACACTAACAATATTCAAACATGAATTTCACACT
JMSF028M11+           TAAATTCTACATTAAGTTTTCGCAATAACACTAACAATATTCAAACATGAATTTCACACT
rJMSF028M11-                                           ACAATATTCAAACATGAATTTCACACT
JMFF001M08+                    CATTAAGTTTTCGCAATAACACTAACAATATTCAAACATGAATTTCACACT
                      ____________________________________________________________
consensus             TAAATTCTACATTAAGTTTTCGCAATAACACTAACAATATTCAAACATGAATTTCACACT
 
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JMFN025K15+           AGGCAACATTCATTGAGAACTGGCTAGGTTTAGATCTTGGGCAAAGATGCATGGACATAA
JMSF028M11+           AGGCAACATTCATTGAGAACTGGCTAGGTTTAGATCTTGGGCAAAGATGCATGGACATAA
rJMSF028M11-          AGGCAACATTCATTGAGAACTGGCTAGGTTTAGATCTTGGGCAAAGATGCATGGACATAA
JMFF001M08+           AGGCAACATTCATTGAGAACTGGCTAGGTTTAGATCTTGGGCAAAGATGCATGGACATAA
                      ____________________________________________________________
consensus             AGGCAACATTCATTGAGAACTGGCTAGGTTTAGATCTTGGGCAAAGATGCATGGACATAA
 
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JMFN025K15+           AATATGGGAACAACGTAGGGGTACAAAATACGCCTACTTTGATGAAGGGACATTGGTTAT
JMSF028M11+           AATATGGGAACAACGTAGGGGTACAAAATACGCCTACTTTGATGAAGGGACATTGGTTAT
rJMSF028M11-          AATATGGGAACAACGTAGGGGTACAAAATACGCCTACTTTGATGAAGGGACATTGGTTAT
JMFF001M08+           AATATGGGAACAACGTAGGGGTACAAAATACGCCTACTTTGATGAAGGGACATTGGTTAT
                      ____________________________________________________________
consensus             AATATGGGAACAACGTAGGGGTACAAAATACGCCTACTTTGATGAAGGGACATTGGTTAT
 
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JMFN025K15+           TAGACTCACAAGCCACATTACTATGGACCCTAAGATCCAGCATACTGCAAACAAGACCAA
JMSF028M11+           TAGACTCACAAGCCACATTACTATGGACCCTAAGATCCAGCATACTGCAAACAAGACCAA
rJMSF028M11-          TAGACTCACAAGCCACATTACTATGGACCCTAAGATCCAGCATACTGCAAACAAGACCAA
JMFF001M08+           TAGACTCACAAGCCACATTACTATGGACCCTAAGATCCAGCATACTGCAAACAAGACCAA
                      ____________________________________________________________
consensus             TAGACTCACAAGCCACATTACTATGGACCCTAAGATCCAGCATACTGCAAACAAGACCAA
 
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JMFN025K15+           GAAACCTGCCAAAATGGTGGCCAATGGAGGGCCCTGGGGCACATTATTGCCTTCAGTTGC
JMSF028M11+           GAAACCTGCCAAAATGGTGGCCAATGGAGGGCCCTGGGGCACATTATTGCCTTCAGTTGC
rJMSF028M11-          GAAACCTGCCAAAATGGTGGCCAATGGAGGGCCCTGGGGCACATTATTGCCTTCAGTTGC
JMFF001M08+           GAAACCTGCCAAAATGGTGGCCAATGGAGGGCCCTGGGGCACATTATTGCCTTCAGTTGC
                      ____________________________________________________________
consensus             GAAACCTGCCAAAATGGTGGCCAATGGAGGGCCCTGGGGCACATTATTGCCTTCAGTTGC
 
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JMFN025K15+           ATATGATCCTTTTGAGGGATTAGGGTTTGATGCGAAAACTTGAAATGGCTTCTGTTTTAG
JMSF028M11+           ATATGATCCTTTTGAGGGATTAGGGTTTGATGCGAAAACTTGAAATGGCTTCTGTTTTAG
rJMSF028M11-          ATATGATCCTTTTGAGGGATTAGGGTTTGATGCGAAAACTTGAAATGGCTTCTGTTTTAG
JMFF001M08+           ATATGATCCTTTTGAGGGATTAGGGTTTGATGCGAAAACTTGAAATGGCTTCTGTTTTAG
                      ____________________________________________________________
consensus             ATATGATCCTTTTGAGGGATTAGGGTTTGATGCGAAAACTTGAAATGGCTTCTGTTTTAG
 
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JMFN025K15+           ATGCAACCAATCAGAGCTCCTTAACCTAAAATTGAAATGGGTAGACTGCGCATTGCGTCG
JMSF028M11+           ATGCAACCAATCAGAGCTCCTTAACCTAAAATTGAAATGGGTAGACTGCGCATTGCGTCG
rJMSF028M11-          ATGCAACCAATCAGAGCTCCTTAACCTAAAATTGAAATGGGTAGACTGCGCATTGCGTCG
JMFF001M08+           ATGCAACCAATCAGAGCTCCTTAACCTAAAATTGAAATGGGTAGACTGCGCATTGCGTCG
                      ____________________________________________________________
consensus             ATGCAACCAATCAGAGCTCCTTAACCTAAAATTGAAATGGGTAGACTGCGCATTGCGTCG
 
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JMFN025K15+           AGGAGTCAATCGGAAGATGAAGGGACTCTCCGGTCTGCTTCCTCCTCCGGCGGTCGCAAG
JMSF028M11+           AGGAGTCAATCGGAAGATGAAGGGACTCTCCGGTCTGCTTCCTCCTCCGGCGGTCGCAAG
rJMSF028M11-          AGGAGTCAATCGGAAGATGAAGGGACTCTCCGGTCTGCTTCCTCCTCCGGCGGTCGCAAG
JMFF001M08+           AGGAGTCAATCGGAAGATGAAGGGACTCTCCGGTCTGCTTCCTCCTCCGGCGGTCGCAAG
                      ____________________________________________________________
consensus             AGGAGTCAATCGGAAGATGAAGGGACTCTCCGGTCTGCTTCCTCCTCCGGCGGTCGCAAG
 
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JMFN025K15+           GTGAAGAATAGGAAGAATCGAGGAAGAGTACGGGGATGAAGCGCGAGCACCAAAGCAGTG
JMSF028M11+           GTGAAGAATAGGAAGAATCGAGGAAGAGTACGGGGATGAAGCGCGAGCACCAAAGCAGTG
rJMSF028M11-          GTGAAGAATAGGAAGAATCGAGGAAGAGTACGGGGATGAAGCGCGAGCACCAAAGCAGTG
JMFF001M08+           GTGAAGAATAGGAAGAATCGAGGAAGAGTACGGGGATGAAGCGCGAGCACCAAAGCAGTG
                      ____________________________________________________________
consensus             GTGAAGAATAGGAAGAATCGAGGAAGAGTACGGGGATGAAGCGCGAGCACCAAAGCAGTG
 
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JMSF028M11+           GAGAGAAGCCATTCTTTCCTAGCTC                                   
rJMSF028M11-          GAGAGAAGCCATTCTTTCCTAGCTC                                   
JMFF001M08+           GAGAGAAGCCATTCTTTCCTAGCTCGAATAGTACAAGAGACTGAAAGAGTGAATGAAAAT
                      ____________________________________________________________
consensus             GAGAGAAGCCATTCTTTCCTAGCTCGAATAGTACAAGAGACTGAAAGAGTGAATGAAAAT