Contig 000002:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001H11Sequence501000002 (5)ref|XP_009618592.1|1e-61PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis]719000002 (5)ref|XP_009618592.1|5e-119PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis]
JMFN038P20Sequence602000002 (5)ref|XP_009618592.1|3e-63PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis]
JMSF034K10Sequence662000002 (5)ref|XP_009618592.1|3e-104PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis]723000002 (5)ref|XP_009618592.1|2e-117PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034K10- AATTGAGGGTGTTGTTAA
rJMFF001H11- AAAATTGAGGGTGTTGTTAA
                      ____________________________________________________________
consensus AAAATTGAGGGTGTTGTTAA
 
. : . : . : . : . : . :
rJMSF034K10- TGCACATCACATGATATACATACATTGAACAAGGGAAAACAACTAACAATGACAGGTAAG
rJMFF001H11- TGCACATCACATGATATACATACATTGAACAAGGGAAAACAACTAACAATGACAGGTAAG
                      ____________________________________________________________
consensus TGCACATCACATGATATACATACATTGAACAAGGGAAAACAACTAACAATGACAGGTAAG
 
. : . : . : . : . : . :
rJMSF034K10- TTATCACTTCTTCTTTCCAGCTTTACCCTCCTTTCTTCTAATAACTTCATCGGCATACTT
rJMFF001H11- TTATCACTTCTTCTTTCCAGCTTTACCCTCCTTTCTTCTAATAACTTCATCGGCATACTT
                      ____________________________________________________________
consensus TTATCACTTCTTCTTTCCAGCTTTACCCTCCTTTCTTCTAATAACTTCATCGGCATACTT
 
. : . : . : . : . : . :
rJMSF034K10- CACACCCTTACCTTTATACGGCTCCGGAGGCCTCCATTTCCTAATCGAGGCAGCAAACTG
rJMFF001H11- CACACCCTTACCTTTATACGGCTCCGGAGGCCTCCATTTCCTAATCGAGGCAGCAAACTG
JMSF034K10+ AATCGAGGCAGCAAACTG
                      ____________________________________________________________
consensus CACACCCTTACCTTTATACGGCTCCGGAGGCCTCCATTTCCTAATCGAGGCAGCAAACTG
 
. : . : . : . : . : . :
rJMSF034K10- ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
rJMFF001H11- ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
JMSF034K10+ ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
JMFN038P20+ TAAC
                      ____________________________________________________________
consensus ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
 
. : . : . : . : . : . :
rJMSF034K10- CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
rJMFF001H11- CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
JMSF034K10+ CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
JMFN038P20+ CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
                      ____________________________________________________________
consensus CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
 
. : . : . : . : . : . :
rJMSF034K10- ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
rJMFF001H11- ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
JMSF034K10+ ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
JMFN038P20+ ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
JMFF001H11+ CCAACTGCAGTTTCTTGTCAAA
                      ____________________________________________________________
consensus ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
 
. : . : . : . : . : . :
rJMSF034K10- CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
rJMFF001H11- CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
JMSF034K10+ CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
JMFN038P20+ CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
JMFF001H11+ CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
                      ____________________________________________________________
consensus CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
 
. : . : . : . : . : . :
rJMSF034K10- GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
rJMFF001H11- GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
JMSF034K10+ GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
JMFN038P20+ GTTAGCTCCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
JMFF001H11+ GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
                      ____________________________________________________________
consensus GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
 
. : . : . : . : . : . :
rJMSF034K10- CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
rJMFF001H11- CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
JMSF034K10+ CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
JMFN038P20+ CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
JMFF001H11+ CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
                      ____________________________________________________________
consensus CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
 
. : . : . : . : . : . :
rJMSF034K10- AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
rJMFF001H11- AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
JMSF034K10+ AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
JMFN038P20+ AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
JMFF001H11+ AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
                      ____________________________________________________________
consensus AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
 
. : . : . : . : . : . :
rJMSF034K10- TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCANTGGTGAGCT
rJMFF001H11- TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
JMSF034K10+ TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
JMFN038P20+ TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
JMFF001H11+ TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
                      ____________________________________________________________
consensus TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
 
. : . : . : . : . : . :
rJMSF034K10- TAAAGAAACGGATTCCACTAGCATCACCA
rJMFF001H11- TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGA
JMSF034K10+ TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
JMFN038P20+ TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
JMFF001H11+ TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
                      ____________________________________________________________
consensus TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
 
. : . : . : . : . : . :
JMSF034K10+ AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
JMFN038P20+ AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
JMFF001H11+ AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
                      ____________________________________________________________
consensus AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
 
. : . : . : . : . : . :
JMSF034K10+ AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTC
JMFN038P20+ AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTCAAGAGAGAAAGCAA
JMFF001H11+ AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTCAAGAGAGAAAGCAAGT
                      ____________________________________________________________
consensus AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTCAAGAGAGAAAGCAAGT