Clone JMSF039J16 [sequences]

previous contigF:007051 contigR:010568
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
gb:NBE504730_168816732192e-56239-6551-143+212311e-59246-875401-613-3613Nicotiana benthamiana mRNA for bromodomain-containing RNA-binding protein 2 (brp2 gene).
gb:NBE504729_168816612241e-57239-6551-143+242235e-57246-875399-615-3615Nicotiana benthamiana mRNA for bromodomain-containing RNA-binding protein 1 (brp1 gene).
gb:LES249592_168450552163e-55239-6551-143+232264e-58246-872393-602-3602Lycopersicon esculentum mRNA for PSTVd RNA-biding protein, Virp1, clone Virp1a.>gb:LES249593_1684506 Lycopersicon escule
gb:NTA504731_169142322232e-57239-6551-143+272197e-56246-875402-617-3617Nicotiana tabacum mRNA for bromodomain-containing RNA-binding protein 1 (brp1 gene).
gb:NTA504732_169142442185e-56239-6551-143+262197e-56246-875401-616-3616Nicotiana tabacum mRNA for bromodomain-containing RNA-binding protein 2 (brp2 gene).
gb:STU504728_172309662124e-54239-6551-143+252194e-56246-872393-602-3602Solanum tuberosum mRNA for bromodomain-containing RNA-binding protein 1 (brp1 gene).
gb:LES421397_168458722264e-58246-872104-313-3313Lycopersicon esculentum partial mRNA for viroid RNA-binding protein.
gb:BT008626_16398377665e-10239-6281-108+281543e-36228-866390-586-3590Arabidopsis thaliana clone RAFL09-89-N13 (R19946) unknown protein (At5g65630) mRNA, complete cds.
gb:AB026639_15170898665e-10239-62856-163+291526e-36390-866445-587-3643Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
pir|T49984|T499849635e-09239-62276-183+2101472e-34390-866460-603-3678bromodomain protein-like - Arabidopsis thaliana>gb:ATF12B17_1548319 Arabidopsis thaliana DNA chromosome 5, BAC clone F12
gb:OSJN00079_1694483111112e-23591-869259-351-3456Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence.>gb:OSJN00111_1695111 Oryza sativa g
gb:AP005441_1851809121074e-22606-866280-366-3481Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06.
gb:OSJN00079_1694481131074e-22591-869140-232-3299Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence.>gb:OSJN00111_1695109 Oryza sativa g
pir|A86198|A86198141036e-21600-857596-681-3766hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_889641 Arabidopsis thaliana chromosome 1, top arm com
gb:OSJN00111_169510415905e-17591-833156-236-3338Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085C12, complete sequence.
pir|D96757|D9675716843e-15603-830306-381-3461hypothetical protein T18K17.19 [imported] - Arabidopsis thaliana>gb:AE005173_894862 Arabidopsis thaliana chromosome 1, b
gb:AY150503_158506817844e-15615-836326-399-3487Arabidopsis thaliana unknown protein (At1g17790) mRNA, complete cds.
gb:AY056258_156357618844e-15615-836326-399-3487Arabidopsis thaliana unknown protein (At1g17790) mRNA, complete cds.
pir|H86312|H8631219844e-15615-836326-399-3440F2H15.2 protein - Arabidopsis thaliana>gb:AE005172_890744 Arabidopsis thaliana chromosome 1, top arm complete sequence.>
gb:BOIFABP2_163376320776e-13609-8306-79-3165B.oleracea mRNA for IFA binding protein (sp7).
pir|T14462|T1446221776e-13609-8306-79-3165non intermediate filament IFA binding protein - wild cabbage (fragment)
gb:HSHUNKI_201428322591e-07600-875590-683-3722H.sapiens HUNKI mRNA.
gb:AY166680_193749223591e-07600-875590-683-31846Homo sapiens BRD4-NUT fusion oncoprotein (BRD4-NUT fusion) mRNA, complete cds.
gb:AC004798_187467724591e-07600-875601-694-3731Homo sapiens chromosome 19, cosmid R31546, complete sequence.
sp|O60885|BRD4_HUMAN25591e-07600-875590-683-31362Bromodomain-containing protein 4 (HUNK1 protein).>gb:AF386649_1900421 Homo sapiens bromodomain-containing 4 (BRD4) mRNA,
gb:BC076786_255953026583e-07525-830633-743-31362Xenopus laevis bromodomain containing 4, mRNA (cDNA clone MGC:83700 IMAGE:6638394), complete cds.
gb:AF461396_206651727568e-07600-875591-684-3723Mus musculus bromodomain-containing protein BRD4 short variant (Brd4) mRNA, complete cds.
gb:AF461395_206651628568e-07600-875591-684-31400Mus musculus bromodomain-containing protein BRD4 long variant (Brd4) mRNA, complete cds.
gb:AF273217_206114029568e-07600-875591-684-31400Mus musculus cell proliferation related protein CAP (Cap) mRNA, complete cds.
gb:MMPJS2FSH_211697730544e-06600-83013-88-3128M.musculus mRNA for fsh-like protein.
gb:HSRING3GE_202000731544e-06603-845588-680-3754H.sapiens RING3 gene.
gb:HSO27_201924132544e-06603-845635-727-3801Human DNA sequence from clone XX-O27 on chromosome 6 Contains the BRD2 gene encoding bromodomain-containing 2 protein, t
gb:BC063840_198638533544e-06603-845670-762-3836Homo sapiens bromodomain containing 2, mRNA (cDNA clone MGC:74927 IMAGE:6181728), complete cds.
gb:AJ630365_142275034544e-06603-845637-729-3803Canis familiaris MHC class II region on chromosome CFA12, partial sequence, BAC clone 181g17, containing DLA-DMB, DLA-DM
gb:HSM807377_118784335544e-06603-845588-680-3754Homo sapiens mRNA; cDNA DKFZp686N0336 (from clone DKFZp686N0336).
gb:HSM804033_118707536544e-06603-845515-607-3681Homo sapiens mRNA; cDNA DKFZp313H139 (from clone DKFZp313H139).
pir|A56619|A5661937544e-06603-845588-680-3754female sterile homeotic (fsh) homolog RING3 - human>gb:HUMFSHG_2031237 Human homolog of Drosophila female sterile homeot
sp|P25440|BRD2_HUMAN38544e-06603-845635-727-3801Bromodomain-containing protein 2 (RING3 protein) (O27.1.1).>gb:HSM808256_1187978 Homo sapiens mRNA; cDNA DKFZp686E1432 (
gb:BC065949_255420339545e-06510-824552-653-3664Danio rerio zgc:77289, mRNA (cDNA clone MGC:77289 IMAGE:6965194), complete cds.
gb:AF358660_206407140545e-06642-866489-567-3956Mus musculus bromodomain-containing female sterile homeotic-like protein (Fsrg3) mRNA, complete cds.
gb:AF019085_187684241537e-06639-863488-572-3947Homo sapiens bromodomain protein (BRDT) mRNA, complete cds.
gb:FRU311635_257212342539e-06597-824551-624-3701Takifugu rubripes brd3 gene for hypothetical protein, exons 1-11.
gb:MU11KLT_212487843539e-06603-845587-679-3752Mus musculus DNA sequence from clone 11KLT on chromosome 17. Contains mouse RING3 gene, CpG Island.
gb:BX883042_211139044539e-06603-845633-725-3798Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHs
gb:BC031536_209714045539e-06597-824573-646-3726Mus musculus bromodomain containing 3, mRNA (cDNA clone MGC:28328 IMAGE:4015879), complete cds.
gb:AF269193_206098746539e-06597-824573-646-3726Mus musculus bromodomain-containing FSH-like protein FSRG2 (Fsrg2) mRNA, complete cds.
gb:AF100956_205453647539e-06603-845633-725-3798Mus musculus major histocompatibility locus class II region; Fas-binding protein Daxx (DAXX) gene, partial cds; Bing1 (B
gb:AF045462_205229248539e-06603-845633-725-3798Mus musculus female sterile homeotic-related protein Frg-1 mRNA, complete cds.
sp|Q8K2F0|BRD3_MOUSE49539e-06597-824573-646-3726Bromodomain-containing protein 3 (Bromodomain-containing FSH-like protein FSRG2).
gb:GGRING3GE_257337950521e-05603-860554-657-3729G.gallus RING3 gene.
gb:AB078884_246342451521e-05603-860560-663-3735Coturnix japonica DNA, major histocompatibility complex region.
pir|T28145|T2814552521e-05603-860558-661-3733RING3 kinase - chicken>gb:GGBLOCUS_2152577 Gallus gallus (chicken) DNA sequence from a contig of cosmids cB12, c4.5 and
gb:AY338951_194417953522e-05639-863501-585-3960Homo sapiens testis-specific BRDT protein mRNA, complete cds.
gb:HUMORFX_203535754522e-05603-824577-648-3731Homo sapiens KIAA0043 mRNA, partial cds.
gb:AL445931_192776055522e-05603-82436-107-3190Human DNA sequence from clone RP11-374P20 on chromosome 9 Contains the 5' end of the VAV2 gene for vav 2 oncogene, a nov
sp|Q15059|BRD3_HUMAN56522e-05603-824572-643-3726Bromodomain-containing protein 3 (RING3-like protein).>gb:AL445931_1927759 Human DNA sequence from clone RP11-374P20 on
gb:AP003526_183046657513e-05642-830256-318-3360Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03.>gb:AP003708_1832208 Oryza sativa (
gb:BA000027_254770758491e-04642-824656-717-3814Oryzias latipes DNA, MHC Class I Region.
gb:AL672176_250434959491e-04642-824647-708-3806Zebrafish DNA sequence from clone BUSM1-12F11 in linkage group 19 Contains the 3' part of the rxrb gene for retinoid x r
gb:AE014298_112473160491e-04636-845945-1015-31110Drosophila melanogaster chromosome X, complete sequence.>gb:AE014298_1124732 Drosophila melanogaster chromosome X, compl
gb:AE014298_112473061491e-04636-845945-1015-32038Drosophila melanogaster chromosome X, complete sequence.>gb:AE003442_1209912 Drosophila melanogaster chromosome X, secti
sp|P13709|FSH_DROME62491e-04636-845945-1015-32038Female sterile homeotic protein (Fragile-chorion membrane protein).>pir|A43742|A43742 female sterile homeotic protein, 2
pir|T46098|T4609863475e-04603-830258-333-3369hypothetical protein T25B15.50 - Arabidopsis thaliana>gb:ATT25B15_1555435 Arabidopsis thaliana DNA chromosome 3, BAC clo
gb:AB023035_151535564430.007609-842308-390-3477Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9H21.>gb:BT015056_1642026 Arabidopsis thaliana At5g63330 gene
gb:AF191032_247923265430.009663-830675-731-3732Myxine glutinosa RING3 (RING3) mRNA, partial cds.
gb:AY059785_156463366430.009654-875267-346-3688Arabidopsis thaliana putative kinase (At5g14270) mRNA, complete cds.
pir|T48600|T4860067430.009654-875267-346-3703kinase-like protein - Arabidopsis thaliana>gb:ATF18O22_1549231 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (
gb:AP000381_181986668410.035636-872314-397-3818Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12.
gb:CR382122_165493369410.035654-857483-549-3661Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis.
gb:AY180100_158750870410.035612-830271-343-3386Arabidopsis thaliana IMB1 (At2g34900) mRNA, complete cds.
gb:AY062532_156518871410.035636-872314-397-3503Arabidopsis thaliana Unknown protein (At3g27260; K17E12.8) mRNA, complete cds.>gb:AY093312_1575266 Arabidopsis thaliana
pir|T00472|T0047272410.035612-830285-357-3400probable RING3 protein [imported] - Arabidopsis thaliana>gb:AC004238_1531562 Arabidopsis thaliana chromosome 2 clone F19
gb:AY232822_159167773400.045633-851308-382-3696Zea mays global transcription factor group E (gte102) mRNA, complete cds.
gb:BC074685_255817910390.10350-565414-486+2553Xenopus tropicalis dual specificity phosphatase 11 (RNA/RNP complex 1-interacting), mRNA (cDNA clone MGC:69257 IMAGE:530
gb:CR382131_166430474390.10642-866491-566-3653Yarrowia lipolytica chromosome E of strain CLIB99 of Yarrowia lipolytica.
gb:AC006712_120382175390.13642-842520-590-3765Caenorhabditis elegans cosmid Y119C1B, complete sequence.
gb:AC006712_120382076390.13642-842520-590-3851Caenorhabditis elegans cosmid Y119C1B, complete sequence.
gb:AC117176_120804611370.30206-598889-1036+21125Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.
gb:YSCSKI2P_173059977370.38654-84551-113-3216Saccharomyces cerevisiae antiviral protein Ski2p (SKI) mRNA, complete cds.
gb:SCU18116_170995478370.38654-845520-582-3685Saccharomyces cerevisiae Bdf1p (BDF1) gene, complete cds.
gb:SCBDF1A_170655179370.38654-845522-584-3687S.cerevisiae BDF1 gene.
gb:CR380949_164951980370.38654-851482-546-3643Candida glabrata strain CBS138 chromosome C complete sequence.
sp|P35817|BDF1_YEAST81370.38654-845521-583-3686BDF1 protein.>pir|S55955|S55955 bromodomain protein BDF1 - yeast (Saccharomyces cerevisiae)>gb:YSCL8084_1729532 Saccharo
gb:AY057662_156407582370.50654-842274-336-3620Arabidopsis thaliana AT3g01770/F28J7_10 mRNA, complete cds.>gb:AY099729_1576754 Arabidopsis thaliana unknown protein (At
gb:ATAC009325_154290883370.50654-842274-336-3601Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence.>gb:ATAC010797_1543152 Arabidopsis tha
gb:AE014188_96805412360.66362-640552-642+2767Plasmodium falciparum 3D7 chromosome 12, complete sequence.>gb:AE014848_1229446 Plasmodium falciparum 3D7 chromosome 12,
gb:BC046393_209919913351.5290-421167-212+2212Mus musculus zinc finger protein 217, mRNA (cDNA clone IMAGE:4953275), partial cds.
pir|G95940|G9594014351.5326-580332-417+2777probable xanthine dehydrogenase (EC 1.1.1.204) [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB>gb:RM
gb:AP003340_182828784351.5642-875151-221-3238Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05.
gb:AP003053_182450385351.5642-875276-346-3370Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047B08.
gb:CNS07EGF_137393886351.5642-839293-358-3370chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora).
gb:HVGA3HOR_168235787351.9714-875111-169-3286H.vulgare mRNA for gamma 3 hordein, 3' end.
pir|T05718|T0571888351.9714-875111-169-3286gamma-hordein 3 - barley (fragment)
sp|P80198|HOG3_HORVU89351.9714-875114-172-3289Gamma-hordein 3.
gb:AB078351_152372090352.5585-8751115-1206-31495Aspergillus fumigatus TOP 2 gene for DNA topoisomerase II, partial cds.
gb:BC077967_256061215342.5332-643107-207+21199Xenopus laevis MGC80995 protein, mRNA (cDNA clone MGC:80995 IMAGE:5542002), complete cds.
gb:AL732455_250441516342.5206-577854-983+21385Zebrafish DNA sequence from clone CH211-225J17 in linkage group 7 Contains part of a novel gene for a zinc finger protei
gb:CR382137_167054717342.5146-45148-149+2494Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii.
gb:AP003886_183483391343.2624-836382-453-3791Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08.
gb:AE017347_175800018334.3194-466552-652+2912Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence.
gb:PFA929351_139298119334.3341-640531-631+21527Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.
gb:AE014186_93813120335.6353-6012533-2617+22966Plasmodium falciparum 3D7 chromosome 11 complete sequence.>gb:AE014838_1228865 Plasmodium falciparum 3D7 chromosome 11 s
gb:AY596297_63398721335.6425-649276-347+2776Haloarcula marismortui ATCC 43049 chromosome I, complete sequence.
gb:AB014886_151241692335.5603-8001205-1264-31709Emericella nidulans TOP2 gene for typeII DNA topoisomerase, complete cds.
gb:BT003530_135693293335.5118-231404-443+1674Drosophila melanogaster RE12147 full insert cDNA.
gb:AE014298_112524494335.5118-231404-443+1784Drosophila melanogaster chromosome X, complete sequence.>gb:AE014298_1125245 Drosophila melanogaster chromosome X, compl
pir|T30516|T3051695335.5603-8001145-1204-31579type II DNA topoisomerase - Emericella nidulans
gb:AP004124_183793996337.2633-851313-389-3480Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01.>gb:AP005385_1850795 Oryza sativa
gb:AP004124_183793897337.2633-851313-389-3714Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01.>gb:AP005385_1850794 Oryza sativa
gb:AB060276_152181598337.2633-851313-389-3714Oryza sativa mRNA for kinase-like protein, complete cds.
gb:AB078355_152372499339.4603-8691080-1162-31162Penicillium marneffei TOP 2 gene for DNA topoisomerase II, partial cds.
gb:AE014185_93789022327.3461-6551049-1117+21190Plasmodium falciparum 3D7 chromosome 10 complete sequence.>gb:AE014834_1228624 Plasmodium falciparum 3D7 chromosome 10 s
gb:PFMAL3P2_139445123329.5383-652571-663+2746Plasmodium falciparum MAL3P2, complete sequence.
gb:AY665368_134467324329.5209-53834-136+2173Drosophila teissieri CG10200 mRNA, partial cds.
gb:AF059877_123716625329.5290-42124-67+294Drosophila crassifemur Cu-Zn superoxide dismutase (Sod) gene, exon 2 and partial cds.
pir|T42607|T4260726329.5188-337164-213+21442transcription activator - equine herpesvirus 4 (strain NS80567)>gb:AF030027_2182213 Equine herpesvirus 4 strain NS80567,