Clone JMFS104B12 [sequences]

previous contigF:003263 contigR:
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
sp|Q96372|CC48_CAPAN13271e-8855-6181-188+1805Cell division cycle protein 48 homolog.>gb:CACAFP_1644846 C.annuum mRNA for CDC48p-like protein.
sp|P54609|C48A_ARATH23171e-85112-61819-187+1809Cell division control protein 48 homolog A (AtCDC48a).>pir|S60112|S60112 transitional endoplasmic reticulum ATPase - Ara
sp|P54774|CC48_SOYBN33171e-8555-6181-188+1807Cell division cycle protein 48 homolog (Valosin containing protein homolog) (VCP).>pir|T06409|T06409 valosin-containing
pir|T48355|T4835543153e-85112-61852-220+1843transitional endoplasmic reticulum ATPase - Arabidopsis thaliana>gb:ATF12E4_1548347 Arabidopsis thaliana DNA chromosome
sp|Q9LZF6|C48E_ARATH53153e-85112-61819-187+1810Cell division control protein 48 homolog E (AtCDC48e) (Transitional endoplasmic reticulum ATPase E).>gb:BT006485_1639372
sp|Q9SCN8|C48D_ARATH63116e-8455-6181-188+1815Putative cell division control protein 48 homolog D (AtCDC48d) (Transitional endoplasmic reticulum ATPase D).>pir|T46169
gb:AE016959_102278973032e-81112-61822-190+1817Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence.>gb:AE017099_1752608 Oryza sativa (japonica cult
gb:DDU83085_137743982756e-73115-61515-181+1793Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.
gb:AY576993_253823792687e-71112-61515-182+1806Danio rerio clone RK103A4E09 valosin-containing protein mRNA, complete cds.>gb:BC050488_2550372 Danio rerio valosin cont
gb:AB093594_2464541102687e-71112-61515-182+1806Danio rerio CDC48 mRNA, partial cds.
gb:AJ719285_2501472112679e-71112-61515-182+1806Gallus gallus mRNA for hypothetical protein, clone 1c3.
sp|P23787|TERA_XENLA122662e-70112-61515-182+1805Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit).>pir|S19738|S19738 transitional
gb:BC074716_2558209132662e-70112-61515-182+1805Xenopus tropicalis valosin-containing protein, mRNA (cDNA clone MGC:69484 IMAGE:5336248), complete cds.
gb:BC046949_2549816142653e-70112-61515-182+1805Xenopus laevis valosin containing protein, mRNA (cDNA clone MGC:52611 IMAGE:5571505), complete cds.
gb:CQ871266_1454667152653e-70112-61515-182+1806Sequence 35 from Patent WO2004078112.
gb:CQ871264_1454666162653e-70112-61515-182+1493Sequence 33 from Patent WO2004078112.
gb:AK028264_1160892172653e-70112-61515-182+1806Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110001E05 product:valosin containing p
sp|P46462|TERA_RAT182653e-70112-61515-182+1806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
sp|Q01853|TERA_MOUSE192653e-70112-61515-182+1806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
sp|P55072|TERA_HUMAN202653e-70112-61515-182+1806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
gb:AK030751_1162162212648e-70112-61515-182+1806Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730519N02 product:valosin contain
pir|A26360|VPPG222631e-69112-61515-182+1806transitional endoplasmic reticulum ATPase - pig
sp|P03974|TERA_PIG232631e-69112-61515-182+1806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
gb:AY190939_1308792242488e-65112-61812-180+1801Drosophila erecta clone DERF01_42_I03 (D1420) genomic sequence.
gb:AF047037_1236368252448e-64112-61812-180+1801Drosophila melanogaster transitional endoplasmic reticulum ATPase TER94 mRNA, complete cds.
gb:AE013599_1130969262448e-64112-61812-180+1801Drosophila melanogaster chromosome 2R, complete sequence.>gb:AE003831_1226722 Drosophila melanogaster chromosome 2R, sec
gb:CR380956_1652393272419e-63112-61525-192+1830Candida glabrata strain CBS138 chromosome J complete sequence.
sp|P25694|CC48_YEAST282392e-62112-61525-192+1835Cell division control protein 48.>pir|S67669|S67669 transitional endoplasmic reticulum ATPase [validated] - yeast (Sacch
gb:CR382132_1665450292371e-61112-61528-195+1814Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica.
gb:CR382126_1658601302331e-60112-61525-192+1830Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis.
gb:CR382139_1672673312317e-60112-61524-191+1831Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii.
gb:AF202034_1250622322292e-59112-61812-180+1799Drosophila melanogaster endoplasmic reticulum membrane fusion protein (TER94) mRNA, complete cds.
gb:AY080962_1568575332294e-59112-61533-200+1819Aspergillus fumigatus Mvp1p (25d9-1), Nha1p (25d9-2), 25D9-9 (25d9-9), 25D9-10 (25d9-10), Ste50p (25d9-3), Cdc48p (25d9-
gb:AE016819_1748993342288e-59112-61526-193+1832Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence.
gb:SPAC1565_1716556352241e-57112-61535-202+1418S.pombe chromosome I cosmid c1565.
sp|Q9P3A7|CC48_SCHPO362241e-57112-61535-202+1815Cell division cycle protein 48 homolog.
gb:AE017350_1759207372232e-57112-61517-184+1810Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence.
sp|P54811|TER1_CAEEL382223e-57112-61521-188+1809Transitional endoplasmic reticulum ATPase homolog 1 (p97/CDC48 homolog 1).>pir|T18970|T18970 hypothetical protein C06A1.
sp|P54812|TER2_CAEEL392133e-54112-61521-187+1810Transitional endoplasmic reticulum ATPase homolog 2 (p97/CDC48 homolog 2).>pir|T19879|T19879 hypothetical protein C41C4.
gb:CR382400_1375018402125e-54124-61822-187+1806Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.
gb:AF044488_1236083412016e-51139-61514-172+1780Trypanosoma brucei valosin-containing protein homolog (VCP) gene, complete cds.
gb:AF313485S1_1896369421956e-49262-6153-120+1307Homo sapiens tissue-type kidney valosin-containing protein mRNA, partial cds.
pir|H90135|H90135431924e-48139-6182-163+1752cell division cycle protein 48 homolog [imported] - Guillardia theta nucleomorph>gb:AF083031_1766849 Guillardia theta nu
gb:AP005158_1848406441894e-47112-61820-194+1848Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04.
gb:AF199367_1250057451855e-46139-61524-182+1772Entamoeba histolytica cdc48-like protein gene, complete cds.
gb:AK083821_1174079461748e-43319-6151-99+1723Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130015G23 product:valosin c
gb:AF083704_1766935471702e-41115-38720-110+1110Arabidopsis thaliana clone sps248 unknown mRNA.
gb:CNS06C8G_137272148898e-17112-56413-165+1780chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora).
sp|P46468|CDAT_PLAF749711e-11151-570347-485+11229Putative cell division cycle ATPase.>gb:PFMAL7P1_1191826 Plasmodium falciparum 3D7 chromosome 7, *** SEQUENCING IN PROGR
gb:PFACDCATP_139366550534e-06253-5701-107+1709Plasmodium falciparum hypothetical cell division cycle ATPase gene, partial ORF.
gb:AE011061_26882651503e-05142-6155-176+1786Methanosarcina acetivorans str. C2A, section 406 of 534 of the complete genome.>gb:AE010299_909385 Methanosarcina acetiv
gb:BX957219_84342952495e-05145-5734-140+1788Methanococcus maripaludis S2 complete genome; segment 1/5.
gb:AE013270_29077753495e-05142-6095-174+1792Methanosarcina mazei strain Goe1, section 52 of 379 of the complete genome.>gb:AE008384_964886 Methanosarcina mazei stra
gb:AE009780_25558454497e-05142-6158-161+1731Pyrobaculum aerophilum strain IM2 section 35 of 201 of the complete genome.>gb:AE009441_898210 Pyrobaculum aerophilum st
gb:AE009915_25734955499e-05145-6157-157+1738Pyrobaculum aerophilum strain IM2 section 170 of 201 of the complete genome.>gb:AE009441_899975 Pyrobaculum aerophilum s
pir|A69086|A6908656481e-04142-61510-181+1732cell division control protein Cdc48 - Methanobacterium thermoautotrophicum (strain Delta H)>gb:AE000923_29308 Methanobac
gb:AE013356_29158657457e-04145-6157-157+1751Methanosarcina mazei strain Goe1, section 138 of 379 of the complete genome.>gb:AE008384_965695 Methanosarcina mazei str
gb:AE011179_26985058457e-04145-6157-157+1753Methanosarcina acetivorans str. C2A, section 524 of 534 of the complete genome.>gb:AE010299_910409 Methanosarcina acetiv
pir|B72479|B7247959440.003205-6091-130+1699probable transitional endoplasmic reticulum ATPase APE2474 - Aeropyrum pernix (strain K1)>gb:BA000002_653234 Aeropyrum p
gb:AE017199_40329560430.004142-57910-162+1826Nanoarchaeum equitans Kin4-M, complete genome.
sp|Q07590|SAV_SULAC61420.008181-61554-192+1780SAV protein.>pir|S43859|S43859 ATPase - Sulfolobus acidocaldarius>gb:SSOREVGYRA_190720 Sulfolobus acidocaldarius ATPase
sp|Q58556|YB56_METJA62410.014145-5795-146+1903Cell division cycle protein 48 homolog MJ1156.>pir|C64444|C64444 cell division control protein CDC48 homolog - Methanoco
gb:AE010343_26211863410.018136-4655-115+11249Methanopyrus kandleri AV19 section 42 of 157 of the complete genome.>gb:AE009439_902899 Methanopyrus kandleri AV19, comp
gb:AY596297_63291164390.070142-6155-169+1741Haloarcula marismortui ATCC 43049 chromosome I, complete sequence.
gb:BC007562_197081365380.12556-6151-20+1644Homo sapiens valosin-containing protein, mRNA (cDNA clone IMAGE:2988964), partial cds.
sp|Q9HPF0|CDCH_HALN166370.20142-6155-169+1742CdcH protein.>pir|C84319|C84319 cell division cycle protein [imported] - Halobacterium sp. NRC-1>gb:AE005075_63079 Halob
sp|P46464|CDCH_HALSA67370.26142-6155-169+1742CdcH protein.>pir|S47018|S47018 cdcH protein - Halobacterium salinarum>gb:HSCDCH_138747 H.salinarium (R1M1) cdcH gene.
gb:BA000023_69093968370.35145-6157-158+1747Sulfolobus tokodaii str. 7 DNA, complete genome.
pir|S25345|S2534569360.45150-446980-1062-11609probable membrane protein YCR089w - yeast (Saccharomyces cerevisiae)
gb:BA000011_66541770360.59178-61522-170+1745Thermoplasma volcanium GSS1 DNA, complete genome.
gb:AY596297_63224371360.59181-61517-165+1757Haloarcula marismortui ATCC 43049 chromosome I, complete sequence.
sp|P25653|FIG2_YEAST72360.59150-446980-1062-11609Factor induced gene 2 precursor (Cell wall adhesin FIG2).>gb:SCCHRIII_1706928 S.cerevisiae chromosome III complete DNA s
gb:AE014185_93764973350.77403-579401-457+1646Plasmodium falciparum 3D7 chromosome 10 complete sequence.>gb:AE014830_1228383 Plasmodium falciparum 3D7 chromosome 10 s
gb:AP006841_57217374350.77172-600136-262+1360Bacteroides fragilis YCH46 DNA, complete genome.
gb:AE005154_6402475341.7142-6152-165+1737Halobacterium sp. NRC-1 plasmid pNRC200 section 15 of 32 of the complete genome.>gb:AE004438_888943 Halobacterium sp. NR
gb:AJ627420_52787576342.2202-42929-103+1107Uncultured crenarchaeote genomic fragment 6a13.
sp|O05209|VAT_THEAC77333.8178-61522-170+1745VCP-like ATPase.>pir|T37458|T37458 VCP-like ATPase - Thermoplasma acidophilum>gb:TACID3_196599 Thermoplasma acidophilum
gb:HSA238221_200069678335.0232-393108-163+1534Homo sapiens RPC62 gene for RNA polymerase III subunit, exon 1 and joined CDS.
gb:BC004424_196926279335.0232-393108-163+1411Homo sapiens polymerase (RNA) III (DNA directed) polypeptide C (62kD), mRNA (cDNA clone MGC:3538 IMAGE:2820818), complet
gb:DOR489284_138126580335.0361-60911-97-3258Drepanosiphum oregonensis partial lw-Rh gene for long-wavelength opsin, exons 1-5.
gb:CP000013_86995081335.0109-393292-392-3481Borrelia garinii PBi, complete genome.
pir|D71680|D7168082335.0277-60997-212+1683ribonuclease E (rne) RP256 - Rickettsia prowazekii>gb:RPXX02_167052 Rickettsia prowazekii strain Madrid E, complete geno
sp|Q9BUI4|RPC3_HUMAN83335.0232-393108-163+1534DNA-directed RNA polymerase III 62 kDa polypeptide (EC 2.7.7.6) (RNA polymerase C subunit 3) (RPC3) (RNA polymerase III
gb:AE010640_26525084326.5124-312117-180+1400Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 182 of 197 of the complete genome.>gb:AE009951_912418 Fusob
gb:AF445798_127168585328.5117-344139-212-1522Taenia asiatica mitochondrion, complete genome.
gb:AF314223_126165486328.5117-344139-212-1524Hymenolepis diminuta mitochondrion, complete genome.
gb:BX569691_77584987328.5172-360129-188-3235Synechococcus sp. WH8102 complete genome; segment 3/7.