Clone JMFS085D06 [sequences]

previous contigF:003709 contigR:
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
sp|P31542|CLAB_LYCES11353e-48343-60991-179+1923ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplast precursor.>pir|B35905|B35905 endopeptidase
gb:AF043539_176374531354e-42343-60990-178+1891Spinacia oleracea ClpC protease (clpC) mRNA, chloroplast gene encoding chloroplast protein, complete cds.
sp|P35100|CLPA_PEA41357e-40343-60991-179+1922ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplast precursor.>pir|S31164|S31164 endopeptidase Clp
gb:AB017063_151333451351e-38307-60981-182+1929Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K7.>gb:AY102125_1577730 Arabidopsis thaliana AT5g50920/K3K7_
pir|T52292|T5229261359e-38307-60980-181+1928endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C, chloroplast [imported] - Arabidopsis thaliana>gb:AF022909_1762028
pir|S37557|S37557101354e-31343-60941-129+1874endopeptidase Clp ATP-binding chain A, chloroplast - rape (fragment)
sp|P46523|CLPA_BRANA111354e-31343-60941-129+1874ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplast precursor (Fragment).>gb:BNCLPA_1633519 B.napus
gb:OSJN00240_1697237121357e-31343-60957-145+1888Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence.
sp|P31541|CLAA_LYCES21341e-44343-60993-181+1926ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplast precursor.>pir|A35905|A35905 endopeptidase
gb:BX569691_775840131349e-31343-6091-89+1846Synechococcus sp. WH8102 complete genome; segment 3/7.
sp|O78410|CLPC_GUITH141349e-31343-6091-89+1819ATP-dependent Clp protease ATP-binding subunit clpA homolog.>gb:AF041468_1763464 Guillardia theta complete plastid genom
gb:BA000045_742139151341e-30343-6091-89+1819Gloeobacter violaceus PCC 7421 DNA, complete genome.
pir|AH2180|AH2180161341e-30343-60917-105+1839endopeptidase Clp ATP-binding chain [imported] - Nostoc sp. (strain PCC 7120)>gb:BA000019_683988 Nostoc sp. PCC 7120 DN
pir|S76330|S76330171341e-30343-6091-89+1821endopeptidase Clp (EC 3.4.21.-) ATP-binding chain C [similarity] - Synechocystis sp. (strain PCC 6803)>gb:BA000022_68957
pir|S71553|S71553181341e-30343-60916-104+1839endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity] - Synechococcus sp. (strain PCC 7942)>gb:SSU16134_19
gb:AE017164_395563191332e-30343-6091-89+1856Prochlorococcus marinus subsp. marinus str. CCMP1375 section 4 of 6 of the complete genome.>gb:AE017126_1031232 Prochlor
gb:BA000039_726092201333e-30343-6091-89+1824Thermosynechococcus elongatus BP-1 DNA, complete genome.
pir|T49283|T4928371322e-33343-609114-202+1952AtClpC - Arabidopsis thaliana>gb:AX765872_1474625 Sequence 81 from Patent WO03008440.>gb:ATT21J18_1555142 Arabidopsis th
pir|T52456|T5245681322e-33343-609114-202+1952endopeptidase Clp ATP-binding chain C [imported] - Arabidopsis thaliana>gb:AB022324_1515222 Arabidopsis thaliana mRNA fo
gb:AY056787_156383691322e-33343-609114-202+1558Arabidopsis thaliana AT3g48870/T21J18_140 mRNA, complete cds.
gb:AP008231_580948211323e-30343-60916-104+1839Synechococcus elongatus PCC 6301 DNA, complete genome.
gb:BX572098_798403221324e-30343-6091-89+1859Prochlorococcus marinus MIT9313 complete genome; segment 4/7.
gb:BX572092_796714231326e-30343-6091-89+1842Prochlorococcus marinus MED4 complete genome; segment 3/5.
sp|P51332|CLPC_PORPU241301e-29343-6091-89+1821ATP-dependent Clp protease ATP-binding subunit clpA homolog.>pir|S73253|S73253 endopeptidase Clp (EC 3.4.21.-) ATP-bindi
gb:AY673996_1621408251302e-29343-6091-89+1823Gracilaria tenuistipitata var. liui chloroplast, complete genome.
sp|Q9TM05|CLPC_CYACA261293e-29277-6098-120+1854ATP-dependent Clp protease ATP-binding subunit clpA homolog.>gb:AF022186_1761876 Cyanidium caldarium strain RK1 chloropl
gb:AB002583_1508807271263e-28343-6091-89+1821Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D.
gb:BA000045_742143281218e-27343-6091-89+1330Gloeobacter violaceus PCC 7421 DNA, complete genome.
pir|T47485|T47485291172e-25343-5911-83+1341clpC-like protein - Arabidopsis thaliana>gb:ATF9K21_1551403 Arabidopsis thaliana DNA chromosome 3, BAC clone F9K21.
pir|AE2051|AE2051301087e-23343-6091-89+1814endopeptidase Clp ATP-binding chain [imported] - Nostoc sp. (strain PCC 7120)>gb:BA000019_682952 Nostoc sp. PCC 7120 DN
sp|P49574|CLPC_ODOSI311018e-21343-6091-89+1885ATP-dependent Clp protease ATP-binding subunit clpA homolog.>pir|S78246|S78246 endopeptidase Clp (EC 3.4.21.-) ATP-bindi
gb:BX248359_76324832896e-17337-6094-94+1883Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 6/8.
gb:AX065707_145976733881e-16343-6091-89+1327Sequence 51 from Patent WO0100842.
gb:BA000036_72040534881e-16343-6091-89+1925Corynebacterium glutamicum ATCC 13032 DNA, complete genome.>gb:BX927156_834211 Corynebacterium glutamicum ATCC 13032, IS
gb:BA000035_71731035872e-16343-6091-89+1927Corynebacterium efficiens YS-314 DNA, complete genome.
gb:AE000516_2383136866e-16343-6091-89+1848Mycobacterium tuberculosis CDC1551, complete genome.
gb:BA000030_70258437851e-15343-6091-89+1841Streptomyces avermitilis MA-4680 genomic DNA, complete genome.
gb:BA000030_70048638851e-15343-6091-89+1842Streptomyces avermitilis MA-4680 genomic DNA, complete genome.
pir|T36384|T3638439851e-15343-6091-89+1841probable ATP-binding proteinase - Streptomyces coelicolor>gb:SCO939116_177046 Streptomyces coelicolor A3(2) complete gen
gb:AP006618_55680640841e-15343-6091-89+1851Nocardia farcinica IFM 10152 DNA, complete genome.
gb:AE017228_41116641841e-15343-6091-89+1843Mycobacterium avium subsp. paratuberculosis str. k10, section 2 of 16 of the complete genome.>gb:AE016958_1054570 Mycoba
sp|O06286|CLPC_MYCTU42841e-15343-6091-89+1848Probable ATP-dependent Clp protease ATP-binding subunit.>pir|E70954|E70954 endopeptidase Clp (EC 3.4.21.-) ATP-binding c
gb:MLPUTATP_14877643825e-15343-6091-89+1649Mycobacterium leprae DNA for putative atp operon.
pir|S11163|S1116344825e-15343-6091-89+1649endopeptidase Clp ATP-binding chain C - Mycobacterium leprae (fragment)
sp|P24428|CLPC_MYCLE45825e-15343-6091-89+1848Probable ATP-dependent Clp protease ATP-binding subunit.>pir|C86938|C86938 probable ATP-dependent Clp proteinase [import
gb:AE016850_34858946827e-15343-6095-93+1840Tropheryma whipplei str. Twist, section 1 of 3 of the complete genome.>gb:BX251410_764289 Tropheryma whipplei TW08/27, c
gb:MSGA15AGA_15037847827e-15343-6091-89+197M.leprae antigen 15 kDa gene, complete cds.
gb:AE017283_43006848811e-14343-6091-89+1844Propionibacterium acnes KPA171202, complete genome.
gb:AP006840_57031949812e-14343-6061-88+1833Symbiobacterium thermophilum DNA, complete genome.
gb:AE016822_34105650803e-14343-6091-89+1839Leifsonia xyli subsp. xyli str. CTCB07, complete genome.
gb:AE014295_31074951781e-13343-6091-89+1869Bifidobacterium longum NCC2705, complete genome.
gb:BA000043_73665552703e-11343-6092-89+1810Geobacillus kaustophilus HTA426 DNA, complete genome.
sp|P37571|CLPC_BACSU53703e-11343-6092-89+1810Negative regulator of genetic competence clpC/mecB.>pir|I40508|I40508 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain
gb:BX294144_76878354695e-11343-6091-90+1859Pirellula sp. strain 1 complete genome; segment 12/24.
gb:AE017333_44604055698e-11343-6092-89+1810Bacillus licheniformis DSM 13, complete genome.>gb:CP000002_855863 Bacillus licheniformis ATCC 14580, complete genome.>g
gb:BA000045_74266356681e-10355-6099-93+1348Gloeobacter violaceus PCC 7421 DNA, complete genome.
gb:BA000028_69448057681e-10343-6092-89+1809Oceanobacillus iheyensis HTE831 DNA, complete genome.
pir|G83662|G8366258681e-10343-6092-89+1813class III stress response-related ATPase clpC [imported] - Bacillus halodurans (strain C-125)>gb:BA000004_654049 Bacillu
gb:CP000001_85071359672e-10343-6092-89+1811Bacillus cereus ZK, complete genome.
gb:BA000045_74161760673e-10343-6091-89+1778Gloeobacter violaceus PCC 7421 DNA, complete genome.
gb:AE017024_38037761665e-10343-6092-89+1811Bacillus anthracis str. Ames section 1 of 18 of the complete genome.>gb:AE017225_405494 Bacillus anthracis str. Sterne,
gb:AE016998_37514062665e-10343-6092-89+1811Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome.>gb:AE016877_1015390 Bacillus cereus ATCC 14579 comple
gb:AE013175_28989363641e-09337-6091-90+1816Thermoanaerobacter tengcongensis MB4, section 202 of 244 of the complete genome.>gb:AE008691_1111958 Thermoanaerobacter
gb:CP000027_7907164634e-09346-6095-92+1824Dehalococcoides ethenogenes 195, complete genome.
gb:AE017322_44268265627e-09343-6092-89+1820Listeria monocytogenes str. 4b F2365, section 1 of 10 of the complete genome.>gb:AE017262_1075038 Listeria monocytogenes
gb:LMU40604_14166166627e-09343-6092-89+1825Listeria monocytogenes ClpC ATPase (mec) gene, complete cds.
pir|AI1465|AI146567627e-09343-6092-89+1820endopeptidase Clp ATP-binding chain C [imported] - Listeria innocua (strain Clip11262)>gb:AL596164_537611 Listeria innoc
pir|AI1103|AI110368627e-09343-6092-89+1820endopeptidase Clp ATP-binding chain C [imported] - Listeria monocytogenes (strain EGD-e)>gb:AL591974_534724 Listeria mon
gb:BA000033_71077269596e-08343-6092-89+1818Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2.
pir|F89819|F8981970596e-08343-6092-89+1818endopeptidase [imported] - Staphylococcus aureus (strain N315)>gb:BA000017_676222 Staphylococcus aureus subsp. aureus Mu
gb:AP006627_56244871581e-07343-6092-93+1818Bacillus clausii KSM-K16 DNA, complete genome.
pir|H72404|H7240472581e-07343-6091-89+1820endopeptidase Clp, ATP-binding chain - Thermotoga maritima (strain MSB8)>gb:AE001705_38118 Thermotoga maritima MSB8 sec
pir|G72079|G7207973572e-07343-6091-90+1845endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity] - Chlamydophila pneumoniae (strain CWL029)>gb:AE0016
sp|Q9Z8A6|CLPC_CHLPN74572e-07343-6091-90+1845Probable ATP-dependent Clp protease ATP-binding subunit.>pir|G81590|G81590 ATP-dependent Clp proteinase, ATP-binding cha
pir|C86545|C8654575565e-07343-6091-90+1845ClpC proteinase [imported] - Chlamydophila pneumoniae (strain J138)>gb:BA000008_663808 Chlamydophila pneumoniae J138 ge
gb:AE016995_37441876557e-07343-6091-90+1846Chlamydophila caviae GPIC section 2 of 4 of the complete genome.>gb:AE015925_994097 Chlamydophila caviae GPIC complete g
gb:CP000029_8078977557e-07343-6092-89+1817Staphylococcus epidermidis RP62A, complete genome.>gb:AE016744_321937 Staphylococcus epidermidis ATCC 12228, section 1 o
sp|O84288|CLPC_CHLTR78559e-07343-6091-90+1854Probable ATP-dependent Clp protease ATP-binding subunit.>pir|C71533|C71533 endopeptidase Clp (EC 3.4.21.-) ATP-binding c
sp|Q9PKA8|CLPC_CHLMU79559e-07343-60917-106+1870Probable ATP-dependent Clp protease ATP-binding subunit.>pir|B81689|B81689 ATP-dependent Clp proteinase, ATP-binding cha
gb:BX908798_83106780551e-06343-6091-90+1847Parachlamydia-related symbiont UWE25, complete genome.
gb:AE015945_32164481542e-06343-6092-90+1811Clostridium tetani E88, section 10 of 10 of the complete genome.>gb:AE015927_964433 Clostridium tetani E88, complete gen
gb:AF497482_51655082534e-06475-6097-51+1797Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence.
gb:AF401667_50758683534e-06355-6095-93+1709Lactobacillus sakei rrnC operon, partial sequence.
pir|C97292|C9729284528e-06343-6092-91+1813ATPases with chaperone activity clpC, two ATP-binding domain CAC3189 [imported] - Clostridium acetobutylicum>gb:AE007814
pir|D75436|D7543685495e-05352-6094-89+1747ATP-dependent Clp proteinase, ATP-binding subunit ClpC - Deinococcus radiodurans (strain R1)>gb:AE001961_41388 Deinococc
gb:AE017301_43581486496e-05352-6093-88+1736Thermus thermophilus HB27 section 1 of 7 of the complete genome.>gb:AP008226_577999 Thermus thermophilus HB8 genomic DNA
gb:AB083540_1052787472e-04355-54674-137+1175Bacillus cereus clpC gene for stress-related ATPase, partial cds.
gb:AE016957_36721088473e-04349-6033-92+1831Enterococcus faecalis V583, section 11 of 11 of the complete genome.>gb:AE016830_993698 Enterococcus faecalis V583, comp
gb:AP004777_184491589464e-04343-60973-168+1938Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0458B05.
gb:AY166599_158618190464e-04343-60973-168+1938Oryza sativa (indica cultivar-group) ATP-dependent Clp protease ATP-binding subunit precursor (CLPD1) mRNA, complete cds
pir|B70412|B7041291465e-04343-6091-86+1810endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity] - Aquifex aeolicus>gb:AE000733_26677 Aquifex aeolicu
gb:BA000045_74022792450.001343-6091-92+1148Gloeobacter violaceus PCC 7421 DNA, complete genome.
gb:AE017288_43257593430.004355-5764-78+1846Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, section 2 of 14 of the complete sequence.>
gb:AE011226_27062994430.004355-5764-78+1846Leptospira interrogans serovar lai str. 56601 chromosome I, section 35 of 397 of the complete sequence.>gb:AE010300_1004
gb:AL935254_55090895430.005355-6065-91+1837Lactobacillus plantarum strain WCFS1 complete genome; segment 3/11.
gb:OSJN00288_169800996400.039328-60965-161+1877Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence.
gb:AY224707_59917497390.067385-5462-55+1166Bacillus cereus strain 391-98 ClpC (clpC) gene, partial cds.
gb:AY224705_59917298390.067385-5462-55+1166Bacillus weihenstephanensis strain WSBC 10311 ClpC (clpC) gene, partial cds.>gb:AY224706_599173 Bacillus weihenstephanen
gb:AY224703_59917099390.067385-5462-55+1166Bacillus weihenstephanensis strain WSBC 10206 ClpC (clpC) gene, partial cds.
gb:AY224698_599165100390.067385-5462-55+1166Bacillus cereus strain BGSC 6A5 ClpC (clpC) gene, partial cds.>gb:AY224699_599166 Bacillus thuringiensis serovar canaden
gb:AY224696_599163101390.067385-5462-55+1166Bacillus thuringiensis serovar israelensis strain ATCC 35646 ClpC (clpC) gene, partial cds.>gb:AY224697_599164 Bacillus
sp|Q54316|HLYB_TREHY102390.088358-6067-91+1828Hemolysin B.>gb:SHTLYBA_183460 S.hyodysenteriae gene for tlyB hemolysin.
gb:AE017201_403706103380.11355-6065-88+1822Lactobacillus johnsonii NCC 533, section 2 of 7 of the complete genome.>gb:AE017198_1122193 Lactobacillus johnsonii NCC
gb:AE012798_285681104380.11355-6095-90+1854Chlorobium tepidum TLS section 19 of 194 of the complete genome.>gb:AE006470_932849 Chlorobium tepidum TLS complete geno
gb:CR522870_100755105380.15349-5644-82+1868Desulfotalea psychrophila LSv54 chromosome.
gb:CP000033_88591106370.26355-6095-89+1825Lactobacillus acidophilus NCFM, complete genome.
gb:AY037264_1560158107360.57343-42679-106+1640Arabidopsis thaliana AT5g51070/K3K7_27 mRNA, complete cds.
pir|H72258|H72258108360.57349-6095-96+1791endopeptidase Clp, ATP-binding chain - Thermotoga maritima (strain MSB8)>gb:AE001792_39290 Thermotoga maritima MSB8 sec
sp|P42762|ERD1_ARATH109360.57343-42679-106+1945ERD1 protein, chloroplast precursor.>pir|JN0901|JN0901 endopeptidase Clp ATP-binding chain C - Arabidopsis thaliana>gb:A
gb:BA000030_702524110332.8346-60961-148+1229Streptomyces avermitilis MA-4680 genomic DNA, complete genome.
gb:AP006618_561678111334.8346-60993-183+1243Nocardia farcinica IFM 10152 DNA, complete genome.
gb:AF027500_470374112334.8355-54615-78+1631Aquifex pyrophilus alanyl-tRNA synthetase (alaS) gene, complete cds; and ATP-dependent Clp protease regulatory subunit (
pir|T36359|T36359113334.8346-60995-182+1258hypothetical protein SCE9.40 - Streptomyces coelicolor>gb:SCO939116_177106 Streptomyces coelicolor A3(2) complete genome