Clone JMFS064F09 [sequences]

previous contigF:003392 contigR:
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
gb:AB025604_15162531481e-04408-54279-124+3225Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.>gb:BT004606_1637640 Arabidopsis thaliana At5g59380 gene
gb:AY888006_25476492457e-04414-55712-59+3257Gallus gallus methyl-CpG-binding domain protein 2 (MBD2) mRNA, complete cds.
gb:AF072245_20533583457e-04414-557158-205+3249Mus musculus testis specific methyl-CpG binding protein MBD2 (Mbd2) mRNA, complete cds.>gb:MM2MBD1_2113737 Mus musculus
gb:AF072243_20533564457e-04414-557158-205+3414Mus musculus methyl-CpG binding protein MBD2 (Mbd2) mRNA, complete cds.>gb:BC046607_2099310 Mus musculus methyl-CpG bind
gb:AY086606_15716535457e-04393-54228-78+3182Arabidopsis thaliana clone 261609 mRNA, complete sequence.
pir|T45595|T455956457e-04393-54228-78+3182hypothetical protein F12A12.100 - Arabidopsis thaliana>gb:ATF12A12_1548299 Arabidopsis thaliana DNA chromosome 3, BAC cl
gb:AB084168_24637107440.002414-56611-61+3283Xenopus laevis mRNA for methyl-CpG binding protein MBD3, complete cds.
gb:HSMETHYL2_20187148440.002414-557155-202+3302Homo sapiens methyl-CpG binding protein 2 (MBD2) gene, exon 2 and alternatively spliced testis-specific methyl-CpG bindi
gb:AF072242_18808539440.002414-557155-202+3411Homo sapiens methyl-CpG binding protein MBD2 (MBD2) mRNA, complete cds.>gb:BC032638_1980587 Homo sapiens methyl-CpG bind
gb:AY238336_252138710430.004414-55711-58+3256Danio rerio methyl-CpG binding protein 2 (mbd2) mRNA, complete cds.
gb:AB061672_246290611420.011414-56611-61+3267Xenopus laevis mRNA for methyl-CpG binding protein MBD2, complete cds.
gb:BC071531_255626712410.014414-55111-56+3273Danio rerio methyl-CpG binding domain protein 3a, mRNA (cDNA clone MGC:86913 IMAGE:6905673), complete cds.
gb:AY398379_253190913410.014414-55111-56+3273Danio rerio clone RK121A1A12 methyl-CpG binding domain protein 3 (MBD3) mRNA, complete cds.
gb:AF170346_247829114400.031423-56613-60+3282Xenopus laevis methyl-CpG binding protein MBD3 (MBD3) mRNA, complete cds.
gb:AF072248_205335915400.041414-56611-61+3285Mus musculus methyl-CpG binding domain-containing protein MBD3 (Mbd3) mRNA, complete cds.>gb:AF120995_2055352 Mus muscul
gb:AF072246_188085416400.041420-5571-46+3146Homo sapiens testis specific methyl-CpG binding protein MBD2 (MBD2) mRNA, partial cds.
gb:AC005943_187506017400.041414-56611-61+3291Homo sapiens chromosome 19, cosmid R30538, complete sequence.>gb:AF072247_1880855 Homo sapiens methyl-CpG binding domain
gb:AY050816_156232018400.04148-2429-74+3548Arabidopsis thaliana unknown protein (At1g63240) mRNA, complete cds.>gb:AY114080_1578491 Arabidopsis thaliana unknown pr
gb:OSJN00167_169606619390.070381-54263-115+3377Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence.
gb:OSJN00120_169523220390.091381-53086-134+3418Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08, complete sequence.
gb:AY238339_131218821390.091414-54211-53+3326Branchiostoma floridae methyl-CpG binding protein 2/3 (Mbd2/3) mRNA, complete cds.
gb:OSJN00209_169673822380.16408-551123-169+3385Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09, complete sequence.
gb:AB015475_151257023370.20381-557170-227+3306Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.>gb:BT014975_1641945 Arabidopsis thaliana At5g59800 gene,
gb:OSJN00120_169523824370.26390-54289-138+3336Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08, complete sequence.>gb:OSJN00167_1696059 Oryza sativa g
gb:OSJN00253_169743625370.35408-54838-81+3505Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08, complete sequence.
gb:BC043835_254829126360.45408-5577-58+3321Xenopus laevis methyl-CpG binding domain protein 1, mRNA (cDNA clone MGC:53260 IMAGE:5569883), complete cds.
gb:AY298900_252576727360.45414-566109-159+3524Danio rerio methyl-cytosine binding protein 2 (mecp2) mRNA, complete cds.
gb:AF051768_247074728360.59414-563101-150+3467Xenopus laevis methyl-CpG-binding protein 2 mRNA, complete cds.>gb:AF106951_2473965 Xenopus laevis methyl-CpG-binding pr
sp|Q09685|YA12_SCHPO29360.5969-2183-49+3411Hypothetical protein C13C5.02 in chromosome I.>pir|S58094|S58094 hypothetical WW domain protein SPAC13C5.02 - fission ye
gb:GGARBP_257292730350.77414-563101-150+3344Gallus gallus mRNA for attachment region binding protein (ARBP).
gb:HSRNACPGB_202003531350.77414-56390-139+3476H.sapiens mRNA for methyl CpG binding protein 2.
gb:HSMECP2X_201869832350.77414-563100-149+3486H.sapiens mRNA for methyl-CpG-binding protein 2.
gb:HSMECP2_201869733350.77414-56391-140+3477H.sapiens MeCP-2 gene.
gb:HSM806231_201824534350.77414-563130-179+3516Homo sapiens mRNA; cDNA DKFZp686A24160 (from clone DKFZp686A24160).
gb:AY541280_195633335350.77414-563112-161+3498Homo sapiens methyl CpG binding protein 2 isoform B (MECP2) mRNA, complete cds.
gb:AF295597_189548436350.77414-563100-149+3486Macaca fascicularis methyl-CpG-binding protein 2 (MECP2) mRNA, complete cds.
gb:AX886192_148164537350.77414-563112-161+3219Sequence 2055 from Patent EP1033401.
pir|S57963|S5796338350.77414-56390-139+3476methyl CpG binding protein 2 - human (fragment)
sp|Q00566|MEC2_RAT39350.77414-563100-149+3492Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>pir|A41907|A41907 methyl-CpG-binding protein 2 - rat>gb:RATMECP2A
sp|Q9Z2D6|MEC2_MOUSE40350.77414-563100-149+3484Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>gb:AF072251_2053361 Mus musculus methyl-CpG binding protein 2 (Me
sp|P51608|MEC2_HUMAN41350.77414-563100-149+3486Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>gb:AF030876_1877681 Homo sapiens chromosome X clone Qc-8D3, RP4-6
gb:AY080662_156839442351.0411-560244-293+3425Arabidopsis thaliana unknown protein (At1g22310) mRNA, complete cds.>gb:AY133726_1581546 Arabidopsis thaliana clone U198
gb:AE014297_113918143351.0408-548364-409+31081Drosophila melanogaster chromosome 3R, complete sequence.>gb:AE003695_1221174 Drosophila melanogaster chromosome 3R, sec
gb:AE014297_113918044351.0408-548452-497+31169Drosophila melanogaster chromosome 3R, complete sequence.>gb:AE003695_1221173 Drosophila melanogaster chromosome 3R, sec
pir|A86356|A8635645351.0411-560343-392+3524hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_891186 Arabidopsis thaliana chromosome 1, top arm com
gb:BC080900_256181546341.7414-56019-67+3640Xenopus tropicalis MBD1 protein, mRNA (cDNA clone IMAGE:6977305), partial cds.
gb:AF412121_249268347341.766-218182-229+3965Gallus gallus late domain-interacting protein 1 mRNA, partial cds.
gb:BC082281_210834848341.766-218195-242+3875Mus musculus neural precursor cell expressed, developmentally down-regulated gene 4-like, mRNA (cDNA clone IMAGE:5401533
gb:BC039746_209842049341.766-21871-118+3855Mus musculus neural precursor cell expressed, developmentally down-regulated gene 4-like, mRNA (cDNA clone MGC:49433 IMA
gb:AK122283_206894850341.766-218170-217+3442Mus musculus mRNA for mKIAA0439 protein.
gb:AF277232_206126551341.766-21871-118+3855Mus musculus ubiquitin-protein ligase Nedd4-2 mRNA, complete cds.
gb:AK042621_116635352341.766-21871-118+3835Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730011F13 product:neural precurs
gb:HSM802187_201742953342.266-218141-188+3820Homo sapiens mRNA; cDNA DKFZp434P2422 (from clone DKFZp434P2422); partial cds.
gb:BC032597_198056354342.266-218192-239+3911Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone MGC:44873 IMAGE:55
gb:BC000621_196688755342.266-21892-139+3855Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone IMAGE:3346045), pa
gb:AY751751_196170756342.266-21826-73+3256Homo sapiens NEDD4-2 minus WW2,3 variant (NEDD4L) mRNA, partial cds, alternatively spliced.
gb:AY312514_194325457342.266-218192-239+3975Homo sapiens NEDD4.2 mRNA, complete cds.
gb:AY112985_193647958342.266-218184-231+3947Homo sapiens ubiquitin ligase NEDD4h (NEDD4L) mRNA, complete cds; alternatively spliced.
gb:AY112984_193647859342.266-218184-231+3967Homo sapiens ubiquitin ligase NEDD4g (NEDD4L) mRNA, complete cds; alternatively spliced.
gb:AF210730_189017160342.266-21871-118+3854Homo sapiens NEDD4La (NEDD4La) mRNA, complete cds.>gb:AF385931_1900073 Homo sapiens ubiquitin ligase NEDD4Lb (NEDD4L) mR
gb:AB071179_187120161342.266-218192-239+3955Homo sapiens NEDL3 mRNA for NEDD4-like ubiquitin ligase 3, complete cds.
gb:AB007899_186402562342.266-218232-279+3995Homo sapiens KIAA0439 mRNA, partial cds.
gb:CR858697_118285363342.266-218196-243+3959Pongo pygmaeus mRNA; cDNA DKFZp459F237 (from clone DKFZp459F237).
pir|T46412|T4641264342.266-218141-188+3820ubiquitin-protein ligase (EC 6.3.2.19) NEDD4 - human (fragment)
gb:AB084169_246371165333.8414-56611-80+3302Xenopus laevis mRNA for methyl-CpG binding protein MBD3 long form, complete cds.>gb:BC077740_2560396 Xenopus laevis meth
gb:BC069837_210612866333.8414-55711-58+3588Mus musculus methyl-CpG binding domain protein 1, mRNA (cDNA clone MGC:76676 IMAGE:30435760), complete cds.
gb:AF072240_205335567333.8414-55711-58+3636Mus musculus methyl-CpG binding protein MBD1 (Mbd1) mRNA, complete cds.>gb:AF120978_2055351 Mus musculus domesticus meth
gb:AK004624_115246468333.8414-55711-58+3588Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200007A08 product:methyl-CpG binding domai
gb:AB097677_1271269333.8196-516222-333+1623Staphylococcus aureus DNA, typeIVd cassette chromosome mec, partial sequence.
gb:XLAJ85_258266870335.072-209191-233+3971Xenopus laevis mRNA for Nedd4 protein.
gb:BC074133_255765171335.072-209191-233+3971Xenopus laevis Nedd4 protein, mRNA (cDNA clone MGC:81849 IMAGE:7008311), complete cds.
gb:AF170347_247829272335.0414-56611-81+3303Xenopus laevis methyl-CpG binding protein MBD3 long form (MBD3) mRNA, complete cds.
gb:AE017341_175389173335.057-17055-90+3847Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence.
gb:BC075469_255857274326.572-209191-233+3970Xenopus tropicalis neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone MGC:89277 IM
gb:BC081932_210817475326.5414-55711-58+3533Rattus norvegicus methyl-CpG binding domain protein 1 (predicted), mRNA (cDNA clone MGC:93958 IMAGE:7114194), complete c
gb:BC024812_209473376326.5414-54273-115+3554Mus musculus methyl-CpG binding domain protein 4, mRNA (cDNA clone MGC:36060 IMAGE:5356016), complete cds.
gb:AF072249_205336077326.5414-54273-115+3554Mus musculus methyl-CpG binding protein MBD4 (Mbd4) mRNA, complete cds.>gb:AF120996_2055353 Mus musculus domesticus meth
gb:AF527618_180840878326.5417-54832-74+3400Zea mays methyl binding domain protein MBD109 (mbd109) mRNA, complete cds.
gb:AB084782_1086979326.590-236149-192+3738Paenibacillus koleovorans dssA gene for sheath polysaccharide-degrading enzyme, complete cds.
gb:BC074695_255818980328.5414-56611-81+3301Xenopus tropicalis methyl-CpG binding domain protein 3, mRNA (cDNA clone MGC:69548 IMAGE:5336695), complete cds.
gb:HSPCM1_201947481328.5402-5572-58+3556H.sapiens mRNA for protein containing MBD 1.
gb:HSA564845_200906382328.5402-5572-58+3550Homo sapiens mRNA for methyl-CpG binding domain protein 1, splice form 6 (MBD1 gene).
gb:HS1MBD3_199742683328.5402-5572-58+3605Homo sapiens methyl-CpG binding protein 1 (MBD1) gene, exons 3 through 15a and complete cds.
gb:BC033242_198088184328.5402-5572-58+3549Homo sapiens methyl-CpG binding domain protein 1, transcript variant 3, mRNA (cDNA clone MGC:45928 IMAGE:5432943), compl
gb:BC011752_197318485328.5414-54586-129+3574Homo sapiens methyl-CpG binding domain protein 4, mRNA (cDNA clone MGC:19710 IMAGE:3534047), complete cds.>gb:CR450305_1
gb:AF532602_190617286328.5414-54586-129+3540Homo sapiens methyl-CpG binding domain protein 4 variant mRNA, complete cds; alternatively spliced.
gb:AF078833_188128087328.5402-5572-58+3503Homo sapiens methyl-CpG binding protein splice variant 4 (MBD1) mRNA, complete cds.
gb:AF078832_188127988328.5402-5572-58+3549Homo sapiens methyl-CpG binding protein splice variant 3 (MBD1) mRNA, complete cds.
gb:AF078831_188127889328.5402-5572-58+3586Homo sapiens methyl-CpG binding protein splice variant 2 (MBD1) mRNA, complete cds.
gb:AF078830_188127790328.5402-5572-58+3605Homo sapiens methyl-CpG binding protein splice variant 1 (MBD1) mRNA, complete cds.
gb:AF072250_188085691328.5414-54586-129+3580Homo sapiens methyl-CpG binding protein MBD4 (MBD4) mRNA, complete cds.>gb:AF114784_1884472 Homo sapiens methyl-CpG bind
gb:AE016817_174715192328.5381-503305-345+3623Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence.
gb:CR858402_118257793328.5402-5572-58+3605Pongo pygmaeus mRNA; cDNA DKFZp459N1432 (from clone DKFZp459N1432).
gb:CR857219_118146694328.5414-54586-129+3573Pongo pygmaeus mRNA; cDNA DKFZp469B1421 (from clone DKFZp469B1421).
pir|S59074|S5907495328.5132-23016-48-151protochlorophyllide reductase (EC 1.3.1.33) - Phormidium foveolarum (fragment)
pir|AI2023|AI202396328.599-230193-234-1329protochlorophyllide oxido-reductase [imported] - Nostoc sp. (strain PCC 7120)>gb:BA000019_682732 Nostoc sp. PCC 7120 DN