name | 5'-sequence | 3'-sequence | length | description |
rank | score | Evalue | region1 | region2 | frame | rank | score | Evalue | region1 | region2 | frame |
gb:AB025604_1516253 | 1 | 48 | 1e-04 | 407-541 | 79-124 | +2 | | | | | | | 225 | Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.>gb:BT004606_1637640 Arabidopsis thaliana At5g59380 gene
|
gb:AY888006_2547649 | 2 | 45 | 8e-04 | 413-556 | 12-59 | +2 | | | | | | | 257 | Gallus gallus methyl-CpG-binding domain protein 2 (MBD2) mRNA, complete cds.
|
gb:AF072245_2053358 | 3 | 45 | 8e-04 | 413-556 | 158-205 | +2 | | | | | | | 249 | Mus musculus testis specific methyl-CpG binding protein MBD2 (Mbd2) mRNA, complete cds.>gb:MM2MBD1_2113737 Mus musculus
|
gb:AF072243_2053356 | 4 | 45 | 8e-04 | 413-556 | 158-205 | +2 | | | | | | | 414 | Mus musculus methyl-CpG binding protein MBD2 (Mbd2) mRNA, complete cds.>gb:BC046607_2099310 Mus musculus methyl-CpG bind
|
gb:AY086606_1571653 | 5 | 45 | 8e-04 | 392-541 | 28-78 | +2 | | | | | | | 182 | Arabidopsis thaliana clone 261609 mRNA, complete sequence.
|
pir|T45595|T45595 | 6 | 45 | 8e-04 | 392-541 | 28-78 | +2 | | | | | | | 182 | hypothetical protein F12A12.100 - Arabidopsis thaliana>gb:ATF12A12_1548299 Arabidopsis thaliana DNA chromosome 3, BAC cl
|
gb:AB084168_2463710 | 7 | 44 | 0.002 | 413-565 | 11-61 | +2 | | | | | | | 283 | Xenopus laevis mRNA for methyl-CpG binding protein MBD3, complete cds.
|
gb:HSMETHYL2_2018714 | 8 | 44 | 0.002 | 413-556 | 155-202 | +2 | | | | | | | 302 | Homo sapiens methyl-CpG binding protein 2 (MBD2) gene, exon 2 and alternatively spliced testis-specific methyl-CpG bindi
|
gb:AF072242_1880853 | 9 | 44 | 0.002 | 413-556 | 155-202 | +2 | | | | | | | 411 | Homo sapiens methyl-CpG binding protein MBD2 (MBD2) mRNA, complete cds.>gb:BC032638_1980587 Homo sapiens methyl-CpG bind
|
gb:AY238336_2521387 | 10 | 43 | 0.004 | 413-556 | 11-58 | +2 | | | | | | | 256 | Danio rerio methyl-CpG binding protein 2 (mbd2) mRNA, complete cds.
|
gb:AB061672_2462906 | 11 | 42 | 0.011 | 413-565 | 11-61 | +2 | | | | | | | 267 | Xenopus laevis mRNA for methyl-CpG binding protein MBD2, complete cds.
|
gb:BC071531_2556267 | 12 | 41 | 0.014 | 413-550 | 11-56 | +2 | | | | | | | 273 | Danio rerio methyl-CpG binding domain protein 3a, mRNA (cDNA clone MGC:86913 IMAGE:6905673), complete cds.
|
gb:AY398379_2531909 | 13 | 41 | 0.014 | 413-550 | 11-56 | +2 | | | | | | | 273 | Danio rerio clone RK121A1A12 methyl-CpG binding domain protein 3 (MBD3) mRNA, complete cds.
|
gb:AF170346_2478291 | 14 | 40 | 0.032 | 422-565 | 13-60 | +2 | | | | | | | 282 | Xenopus laevis methyl-CpG binding protein MBD3 (MBD3) mRNA, complete cds.
|
gb:AF072248_2053359 | 15 | 40 | 0.041 | 413-565 | 11-61 | +2 | | | | | | | 285 | Mus musculus methyl-CpG binding domain-containing protein MBD3 (Mbd3) mRNA, complete cds.>gb:AF120995_2055352 Mus muscul
|
gb:AF072246_1880854 | 16 | 40 | 0.041 | 419-556 | 1-46 | +2 | | | | | | | 146 | Homo sapiens testis specific methyl-CpG binding protein MBD2 (MBD2) mRNA, partial cds.
|
gb:AC005943_1875060 | 17 | 40 | 0.041 | 413-565 | 11-61 | +2 | | | | | | | 291 | Homo sapiens chromosome 19, cosmid R30538, complete sequence.>gb:AF072247_1880855 Homo sapiens methyl-CpG binding domain
|
gb:AY050816_1562320 | 18 | 40 | 0.041 | 47-241 | 9-74 | +2 | | | | | | | 548 | Arabidopsis thaliana unknown protein (At1g63240) mRNA, complete cds.>gb:AY114080_1578491 Arabidopsis thaliana unknown pr
|
gb:OSJN00167_1696066 | 19 | 39 | 0.070 | 380-541 | 63-115 | +2 | | | | | | | 377 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence.
|
gb:OSJN00120_1695232 | 20 | 39 | 0.092 | 380-529 | 86-134 | +2 | | | | | | | 418 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08, complete sequence.
|
gb:AY238339_1312188 | 21 | 39 | 0.092 | 413-541 | 11-53 | +2 | | | | | | | 326 | Branchiostoma floridae methyl-CpG binding protein 2/3 (Mbd2/3) mRNA, complete cds.
|
gb:OSJN00209_1696738 | 22 | 38 | 0.16 | 407-550 | 123-169 | +2 | | | | | | | 385 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09, complete sequence.
|
gb:AB015475_1512570 | 23 | 37 | 0.20 | 380-556 | 170-227 | +2 | | | | | | | 306 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.>gb:BT014975_1641945 Arabidopsis thaliana At5g59800 gene,
|
gb:OSJN00120_1695238 | 24 | 37 | 0.27 | 389-541 | 89-138 | +2 | | | | | | | 336 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08, complete sequence.>gb:OSJN00167_1696059 Oryza sativa g
|
gb:OSJN00253_1697436 | 25 | 37 | 0.35 | 407-547 | 38-81 | +2 | | | | | | | 505 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08, complete sequence.
|
gb:BC043835_2548291 | 26 | 36 | 0.46 | 407-556 | 7-58 | +2 | | | | | | | 321 | Xenopus laevis methyl-CpG binding domain protein 1, mRNA (cDNA clone MGC:53260 IMAGE:5569883), complete cds.
|
gb:AY298900_2525767 | 27 | 36 | 0.46 | 413-565 | 109-159 | +2 | | | | | | | 524 | Danio rerio methyl-cytosine binding protein 2 (mecp2) mRNA, complete cds.
|
gb:AF051768_2470747 | 28 | 36 | 0.60 | 413-562 | 101-150 | +2 | | | | | | | 467 | Xenopus laevis methyl-CpG-binding protein 2 mRNA, complete cds.>gb:AF106951_2473965 Xenopus laevis methyl-CpG-binding pr
|
sp|Q09685|YA12_SCHPO | 29 | 36 | 0.60 | 68-217 | 3-49 | +2 | | | | | | | 411 | Hypothetical protein C13C5.02 in chromosome I.>pir|S58094|S58094 hypothetical WW domain protein SPAC13C5.02 - fission ye
|
gb:GGARBP_2572927 | 30 | 35 | 0.78 | 413-562 | 101-150 | +2 | | | | | | | 344 | Gallus gallus mRNA for attachment region binding protein (ARBP).
|
gb:HSRNACPGB_2020035 | 31 | 35 | 0.78 | 413-562 | 90-139 | +2 | | | | | | | 476 | H.sapiens mRNA for methyl CpG binding protein 2.
|
gb:HSMECP2X_2018698 | 32 | 35 | 0.78 | 413-562 | 100-149 | +2 | | | | | | | 486 | H.sapiens mRNA for methyl-CpG-binding protein 2.
|
gb:HSMECP2_2018697 | 33 | 35 | 0.78 | 413-562 | 91-140 | +2 | | | | | | | 477 | H.sapiens MeCP-2 gene.
|
gb:HSM806231_2018245 | 34 | 35 | 0.78 | 413-562 | 130-179 | +2 | | | | | | | 516 | Homo sapiens mRNA; cDNA DKFZp686A24160 (from clone DKFZp686A24160).
|
gb:AY541280_1956333 | 35 | 35 | 0.78 | 413-562 | 112-161 | +2 | | | | | | | 498 | Homo sapiens methyl CpG binding protein 2 isoform B (MECP2) mRNA, complete cds.
|
gb:AF295597_1895484 | 36 | 35 | 0.78 | 413-562 | 100-149 | +2 | | | | | | | 486 | Macaca fascicularis methyl-CpG-binding protein 2 (MECP2) mRNA, complete cds.
|
gb:AX886192_1481645 | 37 | 35 | 0.78 | 413-562 | 112-161 | +2 | | | | | | | 219 | Sequence 2055 from Patent EP1033401.
|
pir|S57963|S57963 | 38 | 35 | 0.78 | 413-562 | 90-139 | +2 | | | | | | | 476 | methyl CpG binding protein 2 - human (fragment)
|
sp|Q00566|MEC2_RAT | 39 | 35 | 0.78 | 413-562 | 100-149 | +2 | | | | | | | 492 | Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>pir|A41907|A41907 methyl-CpG-binding protein 2 - rat>gb:RATMECP2A
|
sp|Q9Z2D6|MEC2_MOUSE | 40 | 35 | 0.78 | 413-562 | 100-149 | +2 | | | | | | | 484 | Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>gb:AF072251_2053361 Mus musculus methyl-CpG binding protein 2 (Me
|
sp|P51608|MEC2_HUMAN | 41 | 35 | 0.78 | 413-562 | 100-149 | +2 | | | | | | | 486 | Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>gb:AF030876_1877681 Homo sapiens chromosome X clone Qc-8D3, RP4-6
|
gb:AY080662_1568394 | 42 | 35 | 1.0 | 410-559 | 244-293 | +2 | | | | | | | 425 | Arabidopsis thaliana unknown protein (At1g22310) mRNA, complete cds.>gb:AY133726_1581546 Arabidopsis thaliana clone U198
|
gb:AE014297_1139181 | 43 | 35 | 1.0 | 407-547 | 364-409 | +2 | | | | | | | 1081 | Drosophila melanogaster chromosome 3R, complete sequence.>gb:AE003695_1221174 Drosophila melanogaster chromosome 3R, sec
|
gb:AE014297_1139180 | 44 | 35 | 1.0 | 407-547 | 452-497 | +2 | | | | | | | 1169 | Drosophila melanogaster chromosome 3R, complete sequence.>gb:AE003695_1221173 Drosophila melanogaster chromosome 3R, sec
|
pir|A86356|A86356 | 45 | 35 | 1.0 | 410-559 | 343-392 | +2 | | | | | | | 524 | hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_891186 Arabidopsis thaliana chromosome 1, top arm com
|
gb:BC080900_2561815 | 46 | 34 | 1.7 | 413-559 | 19-67 | +2 | | | | | | | 640 | Xenopus tropicalis MBD1 protein, mRNA (cDNA clone IMAGE:6977305), partial cds.
|
gb:AF412121_2492683 | 47 | 34 | 1.7 | 65-217 | 182-229 | +2 | | | | | | | 965 | Gallus gallus late domain-interacting protein 1 mRNA, partial cds.
|
gb:BC082281_2108348 | 48 | 34 | 1.7 | 65-217 | 195-242 | +2 | | | | | | | 875 | Mus musculus neural precursor cell expressed, developmentally down-regulated gene 4-like, mRNA (cDNA clone IMAGE:5401533
|
gb:BC039746_2098420 | 49 | 34 | 1.7 | 65-217 | 71-118 | +2 | | | | | | | 855 | Mus musculus neural precursor cell expressed, developmentally down-regulated gene 4-like, mRNA (cDNA clone MGC:49433 IMA
|
gb:AK122283_2068948 | 50 | 34 | 1.7 | 65-217 | 170-217 | +2 | | | | | | | 442 | Mus musculus mRNA for mKIAA0439 protein.
|
gb:AF277232_2061265 | 51 | 34 | 1.7 | 65-217 | 71-118 | +2 | | | | | | | 855 | Mus musculus ubiquitin-protein ligase Nedd4-2 mRNA, complete cds.
|
gb:AK042621_1166353 | 52 | 34 | 1.7 | 65-217 | 71-118 | +2 | | | | | | | 835 | Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730011F13 product:neural precurs
|
gb:HSM802187_2017429 | 53 | 34 | 2.3 | 65-217 | 141-188 | +2 | | | | | | | 820 | Homo sapiens mRNA; cDNA DKFZp434P2422 (from clone DKFZp434P2422); partial cds.
|
gb:BC032597_1980563 | 54 | 34 | 2.3 | 65-217 | 192-239 | +2 | | | | | | | 911 | Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone MGC:44873 IMAGE:55
|
gb:BC000621_1966887 | 55 | 34 | 2.3 | 65-217 | 92-139 | +2 | | | | | | | 855 | Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone IMAGE:3346045), pa
|
gb:AY751751_1961707 | 56 | 34 | 2.3 | 65-217 | 26-73 | +2 | | | | | | | 256 | Homo sapiens NEDD4-2 minus WW2,3 variant (NEDD4L) mRNA, partial cds, alternatively spliced.
|
gb:AY312514_1943254 | 57 | 34 | 2.3 | 65-217 | 192-239 | +2 | | | | | | | 975 | Homo sapiens NEDD4.2 mRNA, complete cds.
|
gb:AY112985_1936479 | 58 | 34 | 2.3 | 65-217 | 184-231 | +2 | | | | | | | 947 | Homo sapiens ubiquitin ligase NEDD4h (NEDD4L) mRNA, complete cds; alternatively spliced.
|
gb:AY112984_1936478 | 59 | 34 | 2.3 | 65-217 | 184-231 | +2 | | | | | | | 967 | Homo sapiens ubiquitin ligase NEDD4g (NEDD4L) mRNA, complete cds; alternatively spliced.
|
gb:AF210730_1890171 | 60 | 34 | 2.3 | 65-217 | 71-118 | +2 | | | | | | | 854 | Homo sapiens NEDD4La (NEDD4La) mRNA, complete cds.>gb:AF385931_1900073 Homo sapiens ubiquitin ligase NEDD4Lb (NEDD4L) mR
|
gb:AB071179_1871201 | 61 | 34 | 2.3 | 65-217 | 192-239 | +2 | | | | | | | 955 | Homo sapiens NEDL3 mRNA for NEDD4-like ubiquitin ligase 3, complete cds.
|
gb:AB007899_1864025 | 62 | 34 | 2.3 | 65-217 | 232-279 | +2 | | | | | | | 995 | Homo sapiens KIAA0439 mRNA, partial cds.
|
gb:CR858697_1182853 | 63 | 34 | 2.3 | 65-217 | 196-243 | +2 | | | | | | | 959 | Pongo pygmaeus mRNA; cDNA DKFZp459F237 (from clone DKFZp459F237).
|
pir|T46412|T46412 | 64 | 34 | 2.3 | 65-217 | 141-188 | +2 | | | | | | | 820 | ubiquitin-protein ligase (EC 6.3.2.19) NEDD4 - human (fragment)
|
gb:AB084169_2463711 | 65 | 33 | 3.9 | 413-565 | 11-80 | +2 | | | | | | | 302 | Xenopus laevis mRNA for methyl-CpG binding protein MBD3 long form, complete cds.>gb:BC077740_2560396 Xenopus laevis meth
|
gb:BC069837_2106128 | 66 | 33 | 3.9 | 413-556 | 11-58 | +2 | | | | | | | 588 | Mus musculus methyl-CpG binding domain protein 1, mRNA (cDNA clone MGC:76676 IMAGE:30435760), complete cds.
|
gb:AF072240_2053355 | 67 | 33 | 3.9 | 413-556 | 11-58 | +2 | | | | | | | 636 | Mus musculus methyl-CpG binding protein MBD1 (Mbd1) mRNA, complete cds.>gb:AF120978_2055351 Mus musculus domesticus meth
|
gb:AK004624_1152464 | 68 | 33 | 3.9 | 413-556 | 11-58 | +2 | | | | | | | 588 | Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200007A08 product:methyl-CpG binding domai
|
gb:AB097677_12712 | 69 | 33 | 3.9 | 195-515 | 222-333 | +3 | | | | | | | 623 | Staphylococcus aureus DNA, typeIVd cassette chromosome mec, partial sequence.
|
gb:XLAJ85_2582668 | 70 | 33 | 5.0 | 71-208 | 191-233 | +2 | | | | | | | 971 | Xenopus laevis mRNA for Nedd4 protein.
|
gb:BC074133_2557651 | 71 | 33 | 5.0 | 71-208 | 191-233 | +2 | | | | | | | 971 | Xenopus laevis Nedd4 protein, mRNA (cDNA clone MGC:81849 IMAGE:7008311), complete cds.
|
gb:AF170347_2478292 | 72 | 33 | 5.0 | 413-565 | 11-81 | +2 | | | | | | | 303 | Xenopus laevis methyl-CpG binding protein MBD3 long form (MBD3) mRNA, complete cds.
|
gb:AE017341_1753891 | 73 | 33 | 5.0 | 56-169 | 55-90 | +2 | | | | | | | 847 | Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence.
|
gb:BC075469_2558572 | 74 | 32 | 6.6 | 71-208 | 191-233 | +2 | | | | | | | 970 | Xenopus tropicalis neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone MGC:89277 IM
|
gb:BC081932_2108174 | 75 | 32 | 6.6 | 413-556 | 11-58 | +2 | | | | | | | 533 | Rattus norvegicus methyl-CpG binding domain protein 1 (predicted), mRNA (cDNA clone MGC:93958 IMAGE:7114194), complete c
|
gb:BC024812_2094733 | 76 | 32 | 6.6 | 413-541 | 73-115 | +2 | | | | | | | 554 | Mus musculus methyl-CpG binding domain protein 4, mRNA (cDNA clone MGC:36060 IMAGE:5356016), complete cds.
|
gb:AF072249_2053360 | 77 | 32 | 6.6 | 413-541 | 73-115 | +2 | | | | | | | 554 | Mus musculus methyl-CpG binding protein MBD4 (Mbd4) mRNA, complete cds.>gb:AF120996_2055353 Mus musculus domesticus meth
|
gb:AF527618_1808408 | 78 | 32 | 6.6 | 416-547 | 32-74 | +2 | | | | | | | 400 | Zea mays methyl binding domain protein MBD109 (mbd109) mRNA, complete cds.
|
gb:AB084782_10869 | 79 | 32 | 6.6 | 89-235 | 149-192 | +2 | | | | | | | 738 | Paenibacillus koleovorans dssA gene for sheath polysaccharide-degrading enzyme, complete cds.
|
gb:BC074695_2558189 | 80 | 32 | 8.6 | 413-565 | 11-81 | +2 | | | | | | | 301 | Xenopus tropicalis methyl-CpG binding domain protein 3, mRNA (cDNA clone MGC:69548 IMAGE:5336695), complete cds.
|
gb:HSPCM1_2019474 | 81 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 556 | H.sapiens mRNA for protein containing MBD 1.
|
gb:HSA564845_2009063 | 82 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 550 | Homo sapiens mRNA for methyl-CpG binding domain protein 1, splice form 6 (MBD1 gene).
|
gb:HS1MBD3_1997426 | 83 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 605 | Homo sapiens methyl-CpG binding protein 1 (MBD1) gene, exons 3 through 15a and complete cds.
|
gb:BC033242_1980881 | 84 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 549 | Homo sapiens methyl-CpG binding domain protein 1, transcript variant 3, mRNA (cDNA clone MGC:45928 IMAGE:5432943), compl
|
gb:BC011752_1973184 | 85 | 32 | 8.6 | 413-544 | 86-129 | +2 | | | | | | | 574 | Homo sapiens methyl-CpG binding domain protein 4, mRNA (cDNA clone MGC:19710 IMAGE:3534047), complete cds.>gb:CR450305_1
|
gb:AF532602_1906172 | 86 | 32 | 8.6 | 413-544 | 86-129 | +2 | | | | | | | 540 | Homo sapiens methyl-CpG binding domain protein 4 variant mRNA, complete cds; alternatively spliced.
|
gb:AF078833_1881280 | 87 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 503 | Homo sapiens methyl-CpG binding protein splice variant 4 (MBD1) mRNA, complete cds.
|
gb:AF078832_1881279 | 88 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 549 | Homo sapiens methyl-CpG binding protein splice variant 3 (MBD1) mRNA, complete cds.
|
gb:AF078831_1881278 | 89 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 586 | Homo sapiens methyl-CpG binding protein splice variant 2 (MBD1) mRNA, complete cds.
|
gb:AF078830_1881277 | 90 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 605 | Homo sapiens methyl-CpG binding protein splice variant 1 (MBD1) mRNA, complete cds.
|
gb:AF072250_1880856 | 91 | 32 | 8.6 | 413-544 | 86-129 | +2 | | | | | | | 580 | Homo sapiens methyl-CpG binding protein MBD4 (MBD4) mRNA, complete cds.>gb:AF114784_1884472 Homo sapiens methyl-CpG bind
|
gb:AE016817_1747151 | 92 | 32 | 8.6 | 380-502 | 305-345 | +2 | | | | | | | 623 | Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence.
|
gb:CR858402_1182577 | 93 | 32 | 8.6 | 401-556 | 2-58 | +2 | | | | | | | 605 | Pongo pygmaeus mRNA; cDNA DKFZp459N1432 (from clone DKFZp459N1432).
|
gb:CR857219_1181466 | 94 | 32 | 8.6 | 413-544 | 86-129 | +2 | | | | | | | 573 | Pongo pygmaeus mRNA; cDNA DKFZp469B1421 (from clone DKFZp469B1421).
|
gb:AY375291_614292 | 95 | 32 | 8.6 | 440-571 | 55-96 | +2 | | | | | | | 471 | Buchnera aphidicola (Chaitophorus populeti) phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (his
|
pir|S59074|S59074 | 96 | 32 | 8.6 | 131-229 | 16-48 | -3 | | | | | | | 51 | protochlorophyllide reductase (EC 1.3.1.33) - Phormidium foveolarum (fragment)
|
pir|AI2023|AI2023 | 97 | 32 | 8.6 | 98-229 | 193-234 | -3 | | | | | | | 329 | protochlorophyllide oxido-reductase [imported] - Nostoc sp. (strain PCC 7120)>gb:BA000019_682732 Nostoc sp. PCC 7120 DN
|