Clone JMFS062C05 [sequences]

previous contigF:003392 contigR:

name	5'-sequence						3'-sequence						length	description
name	rank	score	Evalue	region1	region2	frame	rank	score	Evalue	region1	region2	frame	length	description
gb:AB025604_1516253	1	48	1e-04	407-541	79-124	+2							225	Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.>gb:BT004606_1637640 Arabidopsis thaliana At5g59380 gene
gb:AY888006_2547649	2	45	8e-04	413-556	12-59	+2							257	Gallus gallus methyl-CpG-binding domain protein 2 (MBD2) mRNA, complete cds.
gb:AF072245_2053358	3	45	8e-04	413-556	158-205	+2							249	Mus musculus testis specific methyl-CpG binding protein MBD2 (Mbd2) mRNA, complete cds.>gb:MM2MBD1_2113737 Mus musculus
gb:AF072243_2053356	4	45	8e-04	413-556	158-205	+2							414	Mus musculus methyl-CpG binding protein MBD2 (Mbd2) mRNA, complete cds.>gb:BC046607_2099310 Mus musculus methyl-CpG bind
gb:AY086606_1571653	5	45	8e-04	392-541	28-78	+2							182	Arabidopsis thaliana clone 261609 mRNA, complete sequence.
pir\|T45595\|T45595	6	45	8e-04	392-541	28-78	+2							182	hypothetical protein F12A12.100 - Arabidopsis thaliana>gb:ATF12A12_1548299 Arabidopsis thaliana DNA chromosome 3, BAC cl
gb:AB084168_2463710	7	44	0.002	413-565	11-61	+2							283	Xenopus laevis mRNA for methyl-CpG binding protein MBD3, complete cds.
gb:HSMETHYL2_2018714	8	44	0.002	413-556	155-202	+2							302	Homo sapiens methyl-CpG binding protein 2 (MBD2) gene, exon 2 and alternatively spliced testis-specific methyl-CpG bindi
gb:AF072242_1880853	9	44	0.002	413-556	155-202	+2							411	Homo sapiens methyl-CpG binding protein MBD2 (MBD2) mRNA, complete cds.>gb:BC032638_1980587 Homo sapiens methyl-CpG bind
gb:AY238336_2521387	10	43	0.004	413-556	11-58	+2							256	Danio rerio methyl-CpG binding protein 2 (mbd2) mRNA, complete cds.
gb:AB061672_2462906	11	42	0.011	413-565	11-61	+2							267	Xenopus laevis mRNA for methyl-CpG binding protein MBD2, complete cds.
gb:BC071531_2556267	12	41	0.014	413-550	11-56	+2							273	Danio rerio methyl-CpG binding domain protein 3a, mRNA (cDNA clone MGC:86913 IMAGE:6905673), complete cds.
gb:AY398379_2531909	13	41	0.014	413-550	11-56	+2							273	Danio rerio clone RK121A1A12 methyl-CpG binding domain protein 3 (MBD3) mRNA, complete cds.
gb:AF170346_2478291	14	40	0.032	422-565	13-60	+2							282	Xenopus laevis methyl-CpG binding protein MBD3 (MBD3) mRNA, complete cds.
gb:AF072248_2053359	15	40	0.041	413-565	11-61	+2							285	Mus musculus methyl-CpG binding domain-containing protein MBD3 (Mbd3) mRNA, complete cds.>gb:AF120995_2055352 Mus muscul
gb:AF072246_1880854	16	40	0.041	419-556	1-46	+2							146	Homo sapiens testis specific methyl-CpG binding protein MBD2 (MBD2) mRNA, partial cds.
gb:AC005943_1875060	17	40	0.041	413-565	11-61	+2							291	Homo sapiens chromosome 19, cosmid R30538, complete sequence.>gb:AF072247_1880855 Homo sapiens methyl-CpG binding domain
gb:AY050816_1562320	18	40	0.041	47-241	9-74	+2							548	Arabidopsis thaliana unknown protein (At1g63240) mRNA, complete cds.>gb:AY114080_1578491 Arabidopsis thaliana unknown pr
gb:OSJN00167_1696066	19	39	0.070	380-541	63-115	+2							377	Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence.
gb:OSJN00120_1695232	20	39	0.092	380-529	86-134	+2							418	Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08, complete sequence.
gb:AY238339_1312188	21	39	0.092	413-541	11-53	+2							326	Branchiostoma floridae methyl-CpG binding protein 2/3 (Mbd2/3) mRNA, complete cds.
gb:OSJN00209_1696738	22	38	0.16	407-550	123-169	+2							385	Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09, complete sequence.
gb:AB015475_1512570	23	37	0.20	380-556	170-227	+2							306	Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.>gb:BT014975_1641945 Arabidopsis thaliana At5g59800 gene,
gb:OSJN00120_1695238	24	37	0.27	389-541	89-138	+2							336	Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08, complete sequence.>gb:OSJN00167_1696059 Oryza sativa g
gb:OSJN00253_1697436	25	37	0.35	407-547	38-81	+2							505	Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08, complete sequence.
gb:BC043835_2548291	26	36	0.46	407-556	7-58	+2							321	Xenopus laevis methyl-CpG binding domain protein 1, mRNA (cDNA clone MGC:53260 IMAGE:5569883), complete cds.
gb:AY298900_2525767	27	36	0.46	413-565	109-159	+2							524	Danio rerio methyl-cytosine binding protein 2 (mecp2) mRNA, complete cds.
gb:AF051768_2470747	28	36	0.60	413-562	101-150	+2							467	Xenopus laevis methyl-CpG-binding protein 2 mRNA, complete cds.>gb:AF106951_2473965 Xenopus laevis methyl-CpG-binding pr
sp\|Q09685\|YA12_SCHPO	29	36	0.60	68-217	3-49	+2							411	Hypothetical protein C13C5.02 in chromosome I.>pir\|S58094\|S58094 hypothetical WW domain protein SPAC13C5.02 - fission ye
gb:GGARBP_2572927	30	35	0.78	413-562	101-150	+2							344	Gallus gallus mRNA for attachment region binding protein (ARBP).
gb:HSRNACPGB_2020035	31	35	0.78	413-562	90-139	+2							476	H.sapiens mRNA for methyl CpG binding protein 2.
gb:HSMECP2X_2018698	32	35	0.78	413-562	100-149	+2							486	H.sapiens mRNA for methyl-CpG-binding protein 2.
gb:HSMECP2_2018697	33	35	0.78	413-562	91-140	+2							477	H.sapiens MeCP-2 gene.
gb:HSM806231_2018245	34	35	0.78	413-562	130-179	+2							516	Homo sapiens mRNA; cDNA DKFZp686A24160 (from clone DKFZp686A24160).
gb:AY541280_1956333	35	35	0.78	413-562	112-161	+2							498	Homo sapiens methyl CpG binding protein 2 isoform B (MECP2) mRNA, complete cds.
gb:AF295597_1895484	36	35	0.78	413-562	100-149	+2							486	Macaca fascicularis methyl-CpG-binding protein 2 (MECP2) mRNA, complete cds.
gb:AX886192_1481645	37	35	0.78	413-562	112-161	+2							219	Sequence 2055 from Patent EP1033401.
pir\|S57963\|S57963	38	35	0.78	413-562	90-139	+2							476	methyl CpG binding protein 2 - human (fragment)
sp\|Q00566\|MEC2_RAT	39	35	0.78	413-562	100-149	+2							492	Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>pir\|A41907\|A41907 methyl-CpG-binding protein 2 - rat>gb:RATMECP2A
sp\|Q9Z2D6\|MEC2_MOUSE	40	35	0.78	413-562	100-149	+2							484	Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>gb:AF072251_2053361 Mus musculus methyl-CpG binding protein 2 (Me
sp\|P51608\|MEC2_HUMAN	41	35	0.78	413-562	100-149	+2							486	Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2).>gb:AF030876_1877681 Homo sapiens chromosome X clone Qc-8D3, RP4-6
gb:AY080662_1568394	42	35	1.0	410-559	244-293	+2							425	Arabidopsis thaliana unknown protein (At1g22310) mRNA, complete cds.>gb:AY133726_1581546 Arabidopsis thaliana clone U198
gb:AE014297_1139181	43	35	1.0	407-547	364-409	+2							1081	Drosophila melanogaster chromosome 3R, complete sequence.>gb:AE003695_1221174 Drosophila melanogaster chromosome 3R, sec
gb:AE014297_1139180	44	35	1.0	407-547	452-497	+2							1169	Drosophila melanogaster chromosome 3R, complete sequence.>gb:AE003695_1221173 Drosophila melanogaster chromosome 3R, sec
pir\|A86356\|A86356	45	35	1.0	410-559	343-392	+2							524	hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_891186 Arabidopsis thaliana chromosome 1, top arm com
gb:BC080900_2561815	46	34	1.7	413-559	19-67	+2							640	Xenopus tropicalis MBD1 protein, mRNA (cDNA clone IMAGE:6977305), partial cds.
gb:AF412121_2492683	47	34	1.7	65-217	182-229	+2							965	Gallus gallus late domain-interacting protein 1 mRNA, partial cds.
gb:BC082281_2108348	48	34	1.7	65-217	195-242	+2							875	Mus musculus neural precursor cell expressed, developmentally down-regulated gene 4-like, mRNA (cDNA clone IMAGE:5401533
gb:BC039746_2098420	49	34	1.7	65-217	71-118	+2							855	Mus musculus neural precursor cell expressed, developmentally down-regulated gene 4-like, mRNA (cDNA clone MGC:49433 IMA
gb:AK122283_2068948	50	34	1.7	65-217	170-217	+2							442	Mus musculus mRNA for mKIAA0439 protein.
gb:AF277232_2061265	51	34	1.7	65-217	71-118	+2							855	Mus musculus ubiquitin-protein ligase Nedd4-2 mRNA, complete cds.
gb:AK042621_1166353	52	34	1.7	65-217	71-118	+2							835	Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730011F13 product:neural precurs
gb:HSM802187_2017429	53	34	2.3	65-217	141-188	+2							820	Homo sapiens mRNA; cDNA DKFZp434P2422 (from clone DKFZp434P2422); partial cds.
gb:BC032597_1980563	54	34	2.3	65-217	192-239	+2							911	Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone MGC:44873 IMAGE:55
gb:BC000621_1966887	55	34	2.3	65-217	92-139	+2							855	Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone IMAGE:3346045), pa
gb:AY751751_1961707	56	34	2.3	65-217	26-73	+2							256	Homo sapiens NEDD4-2 minus WW2,3 variant (NEDD4L) mRNA, partial cds, alternatively spliced.
gb:AY312514_1943254	57	34	2.3	65-217	192-239	+2							975	Homo sapiens NEDD4.2 mRNA, complete cds.
gb:AY112985_1936479	58	34	2.3	65-217	184-231	+2							947	Homo sapiens ubiquitin ligase NEDD4h (NEDD4L) mRNA, complete cds; alternatively spliced.
gb:AY112984_1936478	59	34	2.3	65-217	184-231	+2							967	Homo sapiens ubiquitin ligase NEDD4g (NEDD4L) mRNA, complete cds; alternatively spliced.
gb:AF210730_1890171	60	34	2.3	65-217	71-118	+2							854	Homo sapiens NEDD4La (NEDD4La) mRNA, complete cds.>gb:AF385931_1900073 Homo sapiens ubiquitin ligase NEDD4Lb (NEDD4L) mR
gb:AB071179_1871201	61	34	2.3	65-217	192-239	+2							955	Homo sapiens NEDL3 mRNA for NEDD4-like ubiquitin ligase 3, complete cds.
gb:AB007899_1864025	62	34	2.3	65-217	232-279	+2							995	Homo sapiens KIAA0439 mRNA, partial cds.
gb:CR858697_1182853	63	34	2.3	65-217	196-243	+2							959	Pongo pygmaeus mRNA; cDNA DKFZp459F237 (from clone DKFZp459F237).
pir\|T46412\|T46412	64	34	2.3	65-217	141-188	+2							820	ubiquitin-protein ligase (EC 6.3.2.19) NEDD4 - human (fragment)
gb:AB084169_2463711	65	33	3.9	413-565	11-80	+2							302	Xenopus laevis mRNA for methyl-CpG binding protein MBD3 long form, complete cds.>gb:BC077740_2560396 Xenopus laevis meth
gb:BC069837_2106128	66	33	3.9	413-556	11-58	+2							588	Mus musculus methyl-CpG binding domain protein 1, mRNA (cDNA clone MGC:76676 IMAGE:30435760), complete cds.
gb:AF072240_2053355	67	33	3.9	413-556	11-58	+2							636	Mus musculus methyl-CpG binding protein MBD1 (Mbd1) mRNA, complete cds.>gb:AF120978_2055351 Mus musculus domesticus meth
gb:AK004624_1152464	68	33	3.9	413-556	11-58	+2							588	Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200007A08 product:methyl-CpG binding domai
gb:AB097677_12712	69	33	3.9	195-515	222-333	+3							623	Staphylococcus aureus DNA, typeIVd cassette chromosome mec, partial sequence.
gb:XLAJ85_2582668	70	33	5.0	71-208	191-233	+2							971	Xenopus laevis mRNA for Nedd4 protein.
gb:BC074133_2557651	71	33	5.0	71-208	191-233	+2							971	Xenopus laevis Nedd4 protein, mRNA (cDNA clone MGC:81849 IMAGE:7008311), complete cds.
gb:AF170347_2478292	72	33	5.0	413-565	11-81	+2							303	Xenopus laevis methyl-CpG binding protein MBD3 long form (MBD3) mRNA, complete cds.
gb:AE017341_1753891	73	33	5.0	56-169	55-90	+2							847	Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence.
gb:BC075469_2558572	74	32	6.6	71-208	191-233	+2							970	Xenopus tropicalis neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone MGC:89277 IM
gb:BC081932_2108174	75	32	6.6	413-556	11-58	+2							533	Rattus norvegicus methyl-CpG binding domain protein 1 (predicted), mRNA (cDNA clone MGC:93958 IMAGE:7114194), complete c
gb:BC024812_2094733	76	32	6.6	413-541	73-115	+2							554	Mus musculus methyl-CpG binding domain protein 4, mRNA (cDNA clone MGC:36060 IMAGE:5356016), complete cds.
gb:AF072249_2053360	77	32	6.6	413-541	73-115	+2							554	Mus musculus methyl-CpG binding protein MBD4 (Mbd4) mRNA, complete cds.>gb:AF120996_2055353 Mus musculus domesticus meth
gb:AF527618_1808408	78	32	6.6	416-547	32-74	+2							400	Zea mays methyl binding domain protein MBD109 (mbd109) mRNA, complete cds.
gb:AB084782_10869	79	32	6.6	89-235	149-192	+2							738	Paenibacillus koleovorans dssA gene for sheath polysaccharide-degrading enzyme, complete cds.
gb:BC074695_2558189	80	32	8.6	413-565	11-81	+2							301	Xenopus tropicalis methyl-CpG binding domain protein 3, mRNA (cDNA clone MGC:69548 IMAGE:5336695), complete cds.
gb:HSPCM1_2019474	81	32	8.6	401-556	2-58	+2							556	H.sapiens mRNA for protein containing MBD 1.
gb:HSA564845_2009063	82	32	8.6	401-556	2-58	+2							550	Homo sapiens mRNA for methyl-CpG binding domain protein 1, splice form 6 (MBD1 gene).
gb:HS1MBD3_1997426	83	32	8.6	401-556	2-58	+2							605	Homo sapiens methyl-CpG binding protein 1 (MBD1) gene, exons 3 through 15a and complete cds.
gb:BC033242_1980881	84	32	8.6	401-556	2-58	+2							549	Homo sapiens methyl-CpG binding domain protein 1, transcript variant 3, mRNA (cDNA clone MGC:45928 IMAGE:5432943), compl
gb:BC011752_1973184	85	32	8.6	413-544	86-129	+2							574	Homo sapiens methyl-CpG binding domain protein 4, mRNA (cDNA clone MGC:19710 IMAGE:3534047), complete cds.>gb:CR450305_1
gb:AF532602_1906172	86	32	8.6	413-544	86-129	+2							540	Homo sapiens methyl-CpG binding domain protein 4 variant mRNA, complete cds; alternatively spliced.
gb:AF078833_1881280	87	32	8.6	401-556	2-58	+2							503	Homo sapiens methyl-CpG binding protein splice variant 4 (MBD1) mRNA, complete cds.
gb:AF078832_1881279	88	32	8.6	401-556	2-58	+2							549	Homo sapiens methyl-CpG binding protein splice variant 3 (MBD1) mRNA, complete cds.
gb:AF078831_1881278	89	32	8.6	401-556	2-58	+2							586	Homo sapiens methyl-CpG binding protein splice variant 2 (MBD1) mRNA, complete cds.
gb:AF078830_1881277	90	32	8.6	401-556	2-58	+2							605	Homo sapiens methyl-CpG binding protein splice variant 1 (MBD1) mRNA, complete cds.
gb:AF072250_1880856	91	32	8.6	413-544	86-129	+2							580	Homo sapiens methyl-CpG binding protein MBD4 (MBD4) mRNA, complete cds.>gb:AF114784_1884472 Homo sapiens methyl-CpG bind
gb:AE016817_1747151	92	32	8.6	380-502	305-345	+2							623	Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence.
gb:CR858402_1182577	93	32	8.6	401-556	2-58	+2							605	Pongo pygmaeus mRNA; cDNA DKFZp459N1432 (from clone DKFZp459N1432).
gb:CR857219_1181466	94	32	8.6	413-544	86-129	+2							573	Pongo pygmaeus mRNA; cDNA DKFZp469B1421 (from clone DKFZp469B1421).
gb:AY375291_614292	95	32	8.6	440-571	55-96	+2							471	Buchnera aphidicola (Chaitophorus populeti) phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (his
pir\|S59074\|S59074	96	32	8.6	131-229	16-48	-3							51	protochlorophyllide reductase (EC 1.3.1.33) - Phormidium foveolarum (fragment)
pir\|AI2023\|AI2023	97	32	8.6	98-229	193-234	-3							329	protochlorophyllide oxido-reductase [imported] - Nostoc sp. (strain PCC 7120)>gb:BA000019_682732 Nostoc sp. PCC 7120 DN