Clone JMFS028D06 [sequences]

previous contigF:003263 contigR:
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
sp|Q96372|CC48_CAPAN13246e-8863-6231-187+3805Cell division cycle protein 48 homolog.>gb:CACAFP_1644846 C.annuum mRNA for CDC48p-like protein.
sp|P54609|C48A_ARATH23155e-85120-62319-186+3809Cell division control protein 48 homolog A (AtCDC48a).>pir|S60112|S60112 transitional endoplasmic reticulum ATPase - Ara
sp|P54774|CC48_SOYBN33147e-8563-6231-187+3807Cell division cycle protein 48 homolog (Valosin containing protein homolog) (VCP).>pir|T06409|T06409 valosin-containing
pir|T48355|T4835543131e-84120-62352-219+3843transitional endoplasmic reticulum ATPase - Arabidopsis thaliana>gb:ATF12E4_1548347 Arabidopsis thaliana DNA chromosome
sp|Q9LZF6|C48E_ARATH53131e-84120-62319-186+3810Cell division control protein 48 homolog E (AtCDC48e) (Transitional endoplasmic reticulum ATPase E).>gb:BT006485_1639372
sp|Q9SCN8|C48D_ARATH63093e-8363-6231-187+3815Putative cell division control protein 48 homolog D (AtCDC48d) (Transitional endoplasmic reticulum ATPase D).>pir|T46169
gb:AE016959_102278973001e-80120-62322-189+3817Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence.>gb:AE017099_1752608 Oryza sativa (japonica cult
gb:DDU83085_137743982756e-73123-62315-181+3793Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.
gb:AY576993_253823792687e-71120-62315-182+3806Danio rerio clone RK103A4E09 valosin-containing protein mRNA, complete cds.>gb:BC050488_2550372 Danio rerio valosin cont
gb:AB093594_2464541102687e-71120-62315-182+3806Danio rerio CDC48 mRNA, partial cds.
gb:AJ719285_2501472112679e-71120-62315-182+3806Gallus gallus mRNA for hypothetical protein, clone 1c3.
sp|P23787|TERA_XENLA122662e-70120-62315-182+3805Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit).>pir|S19738|S19738 transitional
gb:BC074716_2558209132662e-70120-62315-182+3805Xenopus tropicalis valosin-containing protein, mRNA (cDNA clone MGC:69484 IMAGE:5336248), complete cds.
gb:BC046949_2549816142654e-70120-62315-182+3805Xenopus laevis valosin containing protein, mRNA (cDNA clone MGC:52611 IMAGE:5571505), complete cds.
gb:CQ871266_1454667152654e-70120-62315-182+3806Sequence 35 from Patent WO2004078112.
gb:CQ871264_1454666162654e-70120-62315-182+3493Sequence 33 from Patent WO2004078112.
gb:AK028264_1160892172654e-70120-62315-182+3806Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110001E05 product:valosin containing p
sp|P46462|TERA_RAT182654e-70120-62315-182+3806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
sp|Q01853|TERA_MOUSE192654e-70120-62315-182+3806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
sp|P55072|TERA_HUMAN202654e-70120-62315-182+3806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
gb:AK030751_1162162212648e-70120-62315-182+3806Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730519N02 product:valosin contain
pir|A26360|VPPG222631e-69120-62315-182+3806transitional endoplasmic reticulum ATPase - pig
sp|P03974|TERA_PIG232631e-69120-62315-182+3806Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin-containing protein) (VC
gb:AY190939_1308792242454e-64120-62312-179+3801Drosophila erecta clone DERF01_42_I03 (D1420) genomic sequence.
gb:AF047037_1236368252424e-63120-62312-179+3801Drosophila melanogaster transitional endoplasmic reticulum ATPase TER94 mRNA, complete cds.
gb:AE013599_1130969262424e-63120-62312-179+3801Drosophila melanogaster chromosome 2R, complete sequence.>gb:AE003831_1226722 Drosophila melanogaster chromosome 2R, sec
gb:CR380956_1652393272419e-63120-62325-192+3830Candida glabrata strain CBS138 chromosome J complete sequence.
sp|P25694|CC48_YEAST282392e-62120-62325-192+3835Cell division control protein 48.>pir|S67669|S67669 transitional endoplasmic reticulum ATPase [validated] - yeast (Sacch
gb:CR382132_1665450292371e-61120-62328-195+3814Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica.
gb:CR382126_1658601302331e-60120-62325-192+3830Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis.
gb:CR382139_1672673312317e-60120-62324-191+3831Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii.
gb:AY080962_1568575322294e-59120-62333-200+3819Aspergillus fumigatus Mvp1p (25d9-1), Nha1p (25d9-2), 25D9-9 (25d9-9), 25D9-10 (25d9-10), Ste50p (25d9-3), Cdc48p (25d9-
gb:AE016819_1748993332288e-59120-62326-193+3832Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence.
gb:AF202034_1250622342271e-58120-62312-179+3799Drosophila melanogaster endoplasmic reticulum membrane fusion protein (TER94) mRNA, complete cds.
gb:SPAC1565_1716556352241e-57120-62335-202+3418S.pombe chromosome I cosmid c1565.
sp|Q9P3A7|CC48_SCHPO362241e-57120-62335-202+3815Cell division cycle protein 48 homolog.
gb:AE017350_1759207372232e-57120-62317-184+3810Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence.
sp|P54811|TER1_CAEEL382223e-57120-62321-188+3809Transitional endoplasmic reticulum ATPase homolog 1 (p97/CDC48 homolog 1).>pir|T18970|T18970 hypothetical protein C06A1.
sp|P54812|TER2_CAEEL392133e-54120-62321-187+3810Transitional endoplasmic reticulum ATPase homolog 2 (p97/CDC48 homolog 2).>pir|T19879|T19879 hypothetical protein C41C4.
gb:CR382400_1375018402111e-53132-62322-186+3806Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.
gb:AF044488_1236083412016e-51147-62314-172+3780Trypanosoma brucei valosin-containing protein homolog (VCP) gene, complete cds.
gb:AF313485S1_1896369421956e-49270-6233-120+3307Homo sapiens tissue-type kidney valosin-containing protein mRNA, partial cds.
pir|H90135|H90135431902e-47147-6232-162+3752cell division cycle protein 48 homolog [imported] - Guillardia theta nucleomorph>gb:AF083031_1766849 Guillardia theta nu
gb:AP005158_1848406441862e-46120-62320-193+3848Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04.
gb:AF199367_1250057451855e-46147-62324-182+3772Entamoeba histolytica cdc48-like protein gene, complete cds.
gb:AK083821_1174079461748e-43327-6231-99+3723Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130015G23 product:valosin c
gb:AF083704_1766935471702e-41123-39520-110+3110Arabidopsis thaliana clone sps248 unknown mRNA.
gb:CNS06C8G_137272148898e-17120-57213-165+3780chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora).
sp|P46468|CDAT_PLAF749711e-11159-578347-485+31229Putative cell division cycle ATPase.>gb:PFMAL7P1_1191826 Plasmodium falciparum 3D7 chromosome 7, *** SEQUENCING IN PROGR
gb:PFACDCATP_139366550534e-06261-5781-107+3709Plasmodium falciparum hypothetical cell division cycle ATPase gene, partial ORF.
gb:AE011061_26882651503e-05150-6235-176+3786Methanosarcina acetivorans str. C2A, section 406 of 534 of the complete genome.>gb:AE010299_909385 Methanosarcina acetiv
gb:BX957219_84342952495e-05153-5814-140+3788Methanococcus maripaludis S2 complete genome; segment 1/5.
gb:AE013270_29077753495e-05150-6175-174+3792Methanosarcina mazei strain Goe1, section 52 of 379 of the complete genome.>gb:AE008384_964886 Methanosarcina mazei stra
gb:AE009780_25558454497e-05150-6238-161+3731Pyrobaculum aerophilum strain IM2 section 35 of 201 of the complete genome.>gb:AE009441_898210 Pyrobaculum aerophilum st
gb:AE009915_25734955499e-05153-6237-157+3738Pyrobaculum aerophilum strain IM2 section 170 of 201 of the complete genome.>gb:AE009441_899975 Pyrobaculum aerophilum s
pir|A69086|A6908656482e-04150-62310-181+3732cell division control protein Cdc48 - Methanobacterium thermoautotrophicum (strain Delta H)>gb:AE000923_29308 Methanobac
gb:AE013356_29158657458e-04153-6237-157+3751Methanosarcina mazei strain Goe1, section 138 of 379 of the complete genome.>gb:AE008384_965695 Methanosarcina mazei str
gb:AE011179_26985058458e-04153-6237-157+3753Methanosarcina acetivorans str. C2A, section 524 of 534 of the complete genome.>gb:AE010299_910409 Methanosarcina acetiv
pir|B72479|B7247959440.003213-6171-130+3699probable transitional endoplasmic reticulum ATPase APE2474 - Aeropyrum pernix (strain K1)>gb:BA000002_653234 Aeropyrum p
gb:AE017199_40329560430.004150-58710-162+3826Nanoarchaeum equitans Kin4-M, complete genome.
sp|Q07590|SAV_SULAC61420.008189-62354-192+3780SAV protein.>pir|S43859|S43859 ATPase - Sulfolobus acidocaldarius>gb:SSOREVGYRA_190720 Sulfolobus acidocaldarius ATPase
sp|Q58556|YB56_METJA62410.014153-5875-146+3903Cell division cycle protein 48 homolog MJ1156.>pir|C64444|C64444 cell division control protein CDC48 homolog - Methanoco
gb:AE010343_26211863410.019144-4735-115+31249Methanopyrus kandleri AV19 section 42 of 157 of the complete genome.>gb:AE009439_902899 Methanopyrus kandleri AV19, comp
gb:AY596297_63291164390.070150-6235-169+3741Haloarcula marismortui ATCC 43049 chromosome I, complete sequence.
gb:BC007562_197081365380.12564-6231-20+3644Homo sapiens valosin-containing protein, mRNA (cDNA clone IMAGE:2988964), partial cds.
sp|Q9HPF0|CDCH_HALN166370.20150-6235-169+3742CdcH protein.>pir|C84319|C84319 cell division cycle protein [imported] - Halobacterium sp. NRC-1>gb:AE005075_63079 Halob
sp|P46464|CDCH_HALSA67370.27150-6235-169+3742CdcH protein.>pir|S47018|S47018 cdcH protein - Halobacterium salinarum>gb:HSCDCH_138747 H.salinarium (R1M1) cdcH gene.
gb:BA000023_69093968370.35153-6237-158+3747Sulfolobus tokodaii str. 7 DNA, complete genome.
pir|S25345|S2534569360.46158-454980-1062-11609probable membrane protein YCR089w - yeast (Saccharomyces cerevisiae)
gb:BA000011_66541770360.60186-62322-170+3745Thermoplasma volcanium GSS1 DNA, complete genome.
gb:AY596297_63224371360.60189-62317-165+3757Haloarcula marismortui ATCC 43049 chromosome I, complete sequence.
sp|P25653|FIG2_YEAST72360.60158-454980-1062-11609Factor induced gene 2 precursor (Cell wall adhesin FIG2).>gb:SCCHRIII_1706928 S.cerevisiae chromosome III complete DNA s
gb:AE014185_93764973350.78411-587401-457+3646Plasmodium falciparum 3D7 chromosome 10 complete sequence.>gb:AE014830_1228383 Plasmodium falciparum 3D7 chromosome 10 s
gb:AP006841_57217374350.78180-608136-262+3360Bacteroides fragilis YCH46 DNA, complete genome.
gb:AE005154_6402475341.7150-6232-165+3737Halobacterium sp. NRC-1 plasmid pNRC200 section 15 of 32 of the complete genome.>gb:AE004438_888943 Halobacterium sp. NR
gb:AJ627420_52787576342.3210-43729-103+3107Uncultured crenarchaeote genomic fragment 6a13.
sp|O05209|VAT_THEAC77333.9186-62322-170+3745VCP-like ATPase.>pir|T37458|T37458 VCP-like ATPase - Thermoplasma acidophilum>gb:TACID3_196599 Thermoplasma acidophilum
gb:HSA238221_200069678335.0240-401108-163+3534Homo sapiens RPC62 gene for RNA polymerase III subunit, exon 1 and joined CDS.
gb:BC004424_196926279335.0240-401108-163+3411Homo sapiens polymerase (RNA) III (DNA directed) polypeptide C (62kD), mRNA (cDNA clone MGC:3538 IMAGE:2820818), complet
gb:DOR489284_138126580335.0369-61711-97-3258Drepanosiphum oregonensis partial lw-Rh gene for long-wavelength opsin, exons 1-5.
gb:CP000013_86995081335.0117-401292-392-3481Borrelia garinii PBi, complete genome.
pir|D71680|D7168082335.0285-61797-212+3683ribonuclease E (rne) RP256 - Rickettsia prowazekii>gb:RPXX02_167052 Rickettsia prowazekii strain Madrid E, complete geno
sp|Q9BUI4|RPC3_HUMAN83335.0240-401108-163+3534DNA-directed RNA polymerase III 62 kDa polypeptide (EC 2.7.7.6) (RNA polymerase C subunit 3) (RPC3) (RNA polymerase III
gb:AE010640_26525084326.6132-320117-180+3400Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 182 of 197 of the complete genome.>gb:AE009951_912418 Fusob
gb:AF445798_127168585328.6125-352139-212-1522Taenia asiatica mitochondrion, complete genome.
gb:AF314223_126165486328.6125-352139-212-1524Hymenolepis diminuta mitochondrion, complete genome.
gb:BX569691_77584987328.6180-368129-188-3235Synechococcus sp. WH8102 complete genome; segment 3/7.