Clone JMFS028A07 [sequences]

previous contigF:003709 contigR:
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
sp|P31542|CLAB_LYCES11675e-4133-44340-176+3923ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplast precursor.>pir|B35905|B35905 endopeptidase
gb:AB017063_151333421653e-4015-44337-179+3929Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K7.>gb:AY102125_1577730 Arabidopsis thaliana AT5g50920/K3K7_
gb:AF043539_176374531622e-396-44330-175+3891Spinacia oleracea ClpC protease (clpC) mRNA, chloroplast gene encoding chloroplast protein, complete cds.
sp|P31541|CLAA_LYCES41583e-3842-44344-178+3926ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplast precursor.>pir|A35905|A35905 endopeptidase
pir|T52292|T5229251576e-3845-44346-178+3928endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C, chloroplast [imported] - Arabidopsis thaliana>gb:AF022909_1762028
sp|P35100|CLPA_PEA61523e-3630-44339-176+3922ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplast precursor.>pir|S31164|S31164 endopeptidase Clp
gb:AY056787_156383671475e-359-44355-199+3558Arabidopsis thaliana AT3g48870/T21J18_140 mRNA, complete cds.
pir|T49283|T4928381475e-359-44355-199+3952AtClpC - Arabidopsis thaliana>gb:AX765872_1474625 Sequence 81 from Patent WO03008440.>gb:ATT21J18_1555142 Arabidopsis th
pir|T52456|T5245691475e-359-44355-199+3952endopeptidase Clp ATP-binding chain C [imported] - Arabidopsis thaliana>gb:AB022324_1515222 Arabidopsis thaliana mRNA fo
pir|S37557|S37557101413e-3375-4434-126+3874endopeptidase Clp ATP-binding chain A, chloroplast - rape (fragment)
sp|P46523|CLPA_BRANA111413e-3375-4434-126+3874ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplast precursor (Fragment).>gb:BNCLPA_1633519 B.napus
gb:OSJN00240_1697237121353e-3142-4439-142+3888Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence.
pir|S71553|S71553131284e-29180-44314-101+3839endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity] - Synechococcus sp. (strain PCC 7942)>gb:SSU16134_19
pir|AH2180|AH2180141275e-29183-44316-102+3839endopeptidase Clp ATP-binding chain [imported] - Nostoc sp. (strain PCC 7120)>gb:BA000019_683988 Nostoc sp. PCC 7120 DN
gb:BX569691_775840151261e-28186-4431-86+3846Synechococcus sp. WH8102 complete genome; segment 3/7.
gb:AP008231_580948161261e-28180-44314-101+3839Synechococcus elongatus PCC 6301 DNA, complete genome.
sp|O78410|CLPC_GUITH171261e-28186-4431-86+3819ATP-dependent Clp protease ATP-binding subunit clpA homolog.>gb:AF041468_1763464 Guillardia theta complete plastid genom
gb:BA000045_742139181262e-28186-4431-86+3819Gloeobacter violaceus PCC 7421 DNA, complete genome.
pir|S76330|S76330191262e-28186-4431-86+3821endopeptidase Clp (EC 3.4.21.-) ATP-binding chain C [similarity] - Synechocystis sp. (strain PCC 6803)>gb:BA000022_68957
gb:AE017164_395563201253e-28186-4431-86+3856Prochlorococcus marinus subsp. marinus str. CCMP1375 section 4 of 6 of the complete genome.>gb:AE017126_1031232 Prochlor
gb:BA000039_726092211253e-28186-4431-86+3824Thermosynechococcus elongatus BP-1 DNA, complete genome.
gb:BX572098_798403221246e-28186-4431-86+3859Prochlorococcus marinus MIT9313 complete genome; segment 4/7.
gb:BX572092_796714231248e-28186-4431-86+3842Prochlorococcus marinus MED4 complete genome; segment 3/5.
sp|P51332|CLPC_PORPU241222e-27186-4431-86+3821ATP-dependent Clp protease ATP-binding subunit clpA homolog.>pir|S73253|S73253 endopeptidase Clp (EC 3.4.21.-) ATP-bindi
gb:AY673996_1621408251222e-27186-4431-86+3823Gracilaria tenuistipitata var. liui chloroplast, complete genome.
sp|Q9TM05|CLPC_CYACA261223e-27180-44330-117+3854ATP-dependent Clp protease ATP-binding subunit clpA homolog.>gb:AF022186_1761876 Cyanidium caldarium strain RK1 chloropl
gb:AB002583_1508807271184e-26186-4431-86+3821Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D.
pir|T47485|T47485281148e-25186-4341-83+3341clpC-like protein - Arabidopsis thaliana>gb:ATF9K21_1551403 Arabidopsis thaliana DNA chromosome 3, BAC clone F9K21.
gb:BA000045_742143291131e-24186-4431-86+3330Gloeobacter violaceus PCC 7421 DNA, complete genome.
pir|AE2051|AE2051301031e-21186-4401-85+3814endopeptidase Clp ATP-binding chain [imported] - Nostoc sp. (strain PCC 7120)>gb:BA000019_682952 Nostoc sp. PCC 7120 DN
sp|P49574|CLPC_ODOSI31941e-18186-4431-86+3885ATP-dependent Clp protease ATP-binding subunit clpA homolog.>pir|S78246|S78246 endopeptidase Clp (EC 3.4.21.-) ATP-bindi
gb:BX248359_76324832816e-15186-4436-91+3883Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 6/8.
gb:AX065707_145976733801e-14186-4431-86+3327Sequence 51 from Patent WO0100842.
gb:BA000036_72040534801e-14186-4431-86+3925Corynebacterium glutamicum ATCC 13032 DNA, complete genome.>gb:BX927156_834211 Corynebacterium glutamicum ATCC 13032, IS
gb:BA000035_71731035801e-14186-4431-86+3927Corynebacterium efficiens YS-314 DNA, complete genome.
gb:AE000516_2383136785e-14186-4431-86+3848Mycobacterium tuberculosis CDC1551, complete genome.
gb:BA000030_70258437778e-14186-4431-86+3841Streptomyces avermitilis MA-4680 genomic DNA, complete genome.
gb:BA000030_70048638778e-14186-4431-86+3842Streptomyces avermitilis MA-4680 genomic DNA, complete genome.
pir|T36384|T3638439778e-14186-4431-86+3841probable ATP-binding proteinase - Streptomyces coelicolor>gb:SCO939116_177046 Streptomyces coelicolor A3(2) complete gen
gb:AP006618_55680640771e-13186-4431-86+3851Nocardia farcinica IFM 10152 DNA, complete genome.
gb:AE017228_41116641771e-13186-4431-86+3843Mycobacterium avium subsp. paratuberculosis str. k10, section 2 of 16 of the complete genome.>gb:AE016958_1054570 Mycoba
sp|O06286|CLPC_MYCTU42771e-13186-4431-86+3848Probable ATP-dependent Clp protease ATP-binding subunit.>pir|E70954|E70954 endopeptidase Clp (EC 3.4.21.-) ATP-binding c
gb:AP006840_57031943771e-13186-4431-86+3833Symbiobacterium thermophilum DNA, complete genome.
gb:MLPUTATP_14877644754e-13186-4431-86+3649Mycobacterium leprae DNA for putative atp operon.
pir|S11163|S1116345754e-13186-4431-86+3649endopeptidase Clp ATP-binding chain C - Mycobacterium leprae (fragment)
sp|P24428|CLPC_MYCLE46754e-13186-4431-86+3848Probable ATP-dependent Clp protease ATP-binding subunit.>pir|C86938|C86938 probable ATP-dependent Clp proteinase [import
gb:AE016850_34858947755e-13186-4435-90+3840Tropheryma whipplei str. Twist, section 1 of 3 of the complete genome.>gb:BX251410_764289 Tropheryma whipplei TW08/27, c
gb:MSGA15AGA_15037848755e-13186-4431-86+397M.leprae antigen 15 kDa gene, complete cds.
gb:AE017283_43006849749e-13186-4431-86+3844Propionibacterium acnes KPA171202, complete genome.
gb:AE016822_34105650732e-12186-4431-86+3839Leifsonia xyli subsp. xyli str. CTCB07, complete genome.
gb:AE014295_31074951701e-11186-4431-86+3869Bifidobacterium longum NCC2705, complete genome.
sp|P37571|CLPC_BACSU52647e-10186-4432-86+3810Negative regulator of genetic competence clpC/mecB.>pir|I40508|I40508 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain
gb:AE017333_44604053649e-10186-4432-86+3810Bacillus licheniformis DSM 13, complete genome.>gb:CP000002_855863 Bacillus licheniformis ATCC 14580, complete genome.>g
gb:BA000045_74266354632e-09198-4409-89+3348Gloeobacter violaceus PCC 7421 DNA, complete genome.
gb:BA000043_73665555632e-09186-4432-86+3810Geobacillus kaustophilus HTA426 DNA, complete genome.
gb:BX294144_76878356624e-09186-4431-87+3859Pirellula sp. strain 1 complete genome; segment 12/24.
gb:BA000028_69448057625e-09186-4432-86+3809Oceanobacillus iheyensis HTE831 DNA, complete genome.
pir|G83662|G8366258625e-09186-4432-86+3813class III stress response-related ATPase clpC [imported] - Bacillus halodurans (strain C-125)>gb:BA000004_654049 Bacillu
gb:BA000045_74161759616e-09186-4431-86+3778Gloeobacter violaceus PCC 7421 DNA, complete genome.
gb:CP000001_85071360601e-08186-4432-86+3811Bacillus cereus ZK, complete genome.
gb:CP000027_7907161601e-08189-4435-89+3824Dehalococcoides ethenogenes 195, complete genome.
gb:AE017024_38037762592e-08186-4432-86+3811Bacillus anthracis str. Ames section 1 of 18 of the complete genome.>gb:AE017225_405494 Bacillus anthracis str. Sterne,
gb:AE016998_37514063592e-08186-4432-86+3811Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome.>gb:AE016877_1015390 Bacillus cereus ATCC 14579 comple
gb:AE013175_28989364585e-08183-4432-87+3816Thermoanaerobacter tengcongensis MB4, section 202 of 244 of the complete genome.>gb:AE008691_1111958 Thermoanaerobacter
pir|G72079|G7207965587e-08186-4431-87+3845endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity] - Chlamydophila pneumoniae (strain CWL029)>gb:AE0016
sp|Q9Z8A6|CLPC_CHLPN66587e-08186-4431-87+3845Probable ATP-dependent Clp protease ATP-binding subunit.>pir|G81590|G81590 ATP-dependent Clp proteinase, ATP-binding cha
pir|C86545|C8654567571e-07186-4431-87+3845ClpC proteinase [imported] - Chlamydophila pneumoniae (strain J138)>gb:BA000008_663808 Chlamydophila pneumoniae J138 ge
gb:AE016995_37441868562e-07186-4431-87+3846Chlamydophila caviae GPIC section 2 of 4 of the complete genome.>gb:AE015925_994097 Chlamydophila caviae GPIC complete g
sp|O84288|CLPC_CHLTR69563e-07186-4431-87+3854Probable ATP-dependent Clp protease ATP-binding subunit.>pir|C71533|C71533 endopeptidase Clp (EC 3.4.21.-) ATP-binding c
sp|Q9PKA8|CLPC_CHLMU70563e-07186-44317-103+3870Probable ATP-dependent Clp protease ATP-binding subunit.>pir|B81689|B81689 ATP-dependent Clp proteinase, ATP-binding cha
gb:AE017322_44268271556e-07186-4432-86+3820Listeria monocytogenes str. 4b F2365, section 1 of 10 of the complete genome.>gb:AE017262_1075038 Listeria monocytogenes
gb:LMU40604_14166172556e-07186-4432-86+3825Listeria monocytogenes ClpC ATPase (mec) gene, complete cds.
pir|AI1465|AI146573556e-07186-4432-86+3820endopeptidase Clp ATP-binding chain C [imported] - Listeria innocua (strain Clip11262)>gb:AL596164_537611 Listeria innoc
pir|AI1103|AI110374556e-07186-4432-86+3820endopeptidase Clp ATP-binding chain C [imported] - Listeria monocytogenes (strain EGD-e)>gb:AL591974_534724 Listeria mon
gb:BX908798_83106775541e-06186-3951-70+3847Parachlamydia-related symbiont UWE25, complete genome.
pir|H72404|H7240476532e-06186-4431-86+3820endopeptidase Clp, ATP-binding chain - Thermotoga maritima (strain MSB8)>gb:AE001705_38118 Thermotoga maritima MSB8 sec
gb:AP006627_56244877501e-05186-3952-71+3818Bacillus clausii KSM-K16 DNA, complete genome.
gb:BA000033_71077278502e-05186-4432-86+3818Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2.
pir|F89819|F8981979502e-05186-4432-86+3818endopeptidase [imported] - Staphylococcus aureus (strain N315)>gb:BA000017_676222 Staphylococcus aureus subsp. aureus Mu
gb:CP000029_8078980487e-05186-4432-86+3817Staphylococcus epidermidis RP62A, complete genome.>gb:AE016744_321937 Staphylococcus epidermidis ATCC 12228, section 1 o
gb:AP004777_184491581471e-04180-44371-165+3938Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0458B05.
gb:AY166599_158618182471e-04180-44371-165+3938Oryza sativa (indica cultivar-group) ATP-dependent Clp protease ATP-binding subunit precursor (CLPD1) mRNA, complete cds
gb:AB083540_1052783471e-04198-38974-137+3175Bacillus cereus clpC gene for stress-related ATPase, partial cds.
gb:AE015945_32164484472e-04186-4432-87+3811Clostridium tetani E88, section 10 of 10 of the complete genome.>gb:AE015927_964433 Clostridium tetani E88, complete gen
pir|C97292|C9729285462e-04186-4432-88+3813ATPases with chaperone activity clpC, two ATP-binding domain CAC3189 [imported] - Clostridium acetobutylicum>gb:AE007814
gb:AF401667_50758686456e-04198-4435-90+3709Lactobacillus sakei rrnC operon, partial sequence.
gb:AF497482_51655087448e-04318-4437-48+3797Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence.
gb:AE017288_43257588448e-04198-4194-78+3846Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, section 2 of 14 of the complete sequence.>
gb:AE011226_27062989448e-04198-4194-78+3846Leptospira interrogans serovar lai str. 56601 chromosome I, section 35 of 397 of the complete sequence.>gb:AE010300_1004
pir|D75436|D7543690440.001186-4431-86+3747ATP-dependent Clp proteinase, ATP-binding subunit ClpC - Deinococcus radiodurans (strain R1)>gb:AE001961_41388 Deinococc
gb:AE016957_36721091430.002186-4431-91+3831Enterococcus faecalis V583, section 11 of 11 of the complete genome.>gb:AE016830_993698 Enterococcus faecalis V583, comp
gb:AE017301_43581492420.004195-4433-85+3736Thermus thermophilus HB27 section 1 of 7 of the complete genome.>gb:AP008226_577999 Thermus thermophilus HB8 genomic DNA
gb:OSJN00288_169800993400.01475-44333-158+3877Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence.
pir|B70412|B7041294400.019186-4431-83+3810endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity] - Aquifex aeolicus>gb:AE000733_26677 Aquifex aeolicu
gb:AY224707_59917495390.032228-3892-55+3166Bacillus cereus strain 391-98 ClpC (clpC) gene, partial cds.
gb:AY224705_59917296390.032228-3892-55+3166Bacillus weihenstephanensis strain WSBC 10311 ClpC (clpC) gene, partial cds.>gb:AY224706_599173 Bacillus weihenstephanen
gb:AY224703_59917097390.032228-3892-55+3166Bacillus weihenstephanensis strain WSBC 10206 ClpC (clpC) gene, partial cds.
gb:AY224698_59916598390.032228-3892-55+3166Bacillus cereus strain BGSC 6A5 ClpC (clpC) gene, partial cds.>gb:AY224699_599166 Bacillus thuringiensis serovar canaden
gb:AY224696_59916399390.032228-3892-55+3166Bacillus thuringiensis serovar israelensis strain ATCC 35646 ClpC (clpC) gene, partial cds.>gb:AY224697_599164 Bacillus
gb:AY037264_1560158100370.093183-26978-106+3640Arabidopsis thaliana AT5g51070/K3K7_27 mRNA, complete cds.
gb:AL935254_550908101370.093198-3985-71+3837Lactobacillus plantarum strain WCFS1 complete genome; segment 3/11.
gb:CR522870_100755102370.093192-4014-80+3868Desulfotalea psychrophila LSv54 chromosome.
sp|Q54316|HLYB_TREHY103370.093216-41689-156+3828Hemolysin B.>gb:SHTLYBA_183460 S.hyodysenteriae gene for tlyB hemolysin.
sp|P42762|ERD1_ARATH104370.093183-26978-106+3945ERD1 protein, chloroplast precursor.>pir|JN0901|JN0901 endopeptidase Clp ATP-binding chain C - Arabidopsis thaliana>gb:A
gb:AE012798_285681105360.27198-3805-65+3854Chlorobium tepidum TLS section 19 of 194 of the complete genome.>gb:AE006470_932849 Chlorobium tepidum TLS complete geno
gb:CP000033_88591106331.3186-3981-71+3825Lactobacillus acidophilus NCFM, complete genome.
gb:AF027500_470374107332.3198-38915-78+3631Aquifex pyrophilus alanyl-tRNA synthetase (alaS) gene, complete cds; and ATP-dependent Clp protease regulatory subunit (
gb:AP005826_1858583108323.0218-418136-203-2212Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0758B01.
gb:AP006618_560567109325.1212-38247-99-2147Nocardia farcinica IFM 10152 DNA, complete genome.
pir|H72258|H72258110325.1192-3925-71+3791endopeptidase Clp, ATP-binding chain - Thermotoga maritima (strain MSB8)>gb:AE001792_39290 Thermotoga maritima MSB8 sec
gb:AE017348_1758334111316.6299-433142-181-2856Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence.
gb:AP006618_561550112316.6186-2541-23+3189Nocardia farcinica IFM 10152 DNA, complete genome.