Clone JMFF020C18 [sequences]

previous contigF:000096 contigR:008653
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
gb:AP004669_184301241971e-49185-5351-117+21440.003324-632956-1067-11068Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11.
gb:AP003566_183093051971e-49185-5351-117+22440.003324-632952-1063-11064Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24.
gb:AF286719_178321311984e-50185-5351-117+21020Arabidopsis thaliana XRN3 (XRN3) mRNA, complete cds.
gb:AY136383_158188421984e-50185-5351-117+2763Arabidopsis thaliana unknown protein (At1g75660) mRNA, complete cds.>gb:BT000175_1634453 Arabidopsis thaliana unknown pr
pir|D96786|D9678631984e-50185-5351-117+21037protein F10A5.15 [imported] - Arabidopsis thaliana>gb:AE005173_895102 Arabidopsis thaliana chromosome 1, bottom arm comp
gb:AF286720_178321461784e-44185-5351-119+21012Arabidopsis thaliana XRN2 (XRN2) mRNA, complete cds.>gb:AK176100_1818088 Arabidopsis thaliana mRNA, complete cds, clone:
gb:AY091687_157469871784e-44185-5351-119+2813Arabidopsis thaliana AT5g42540/K16E1_1 mRNA, complete cds.>gb:AF367296_1791748 Arabidopsis thaliana AT5g42540/K16E1_1 mR
gb:AB022210_151496981784e-44185-5351-119+2746Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16E1.
gb:AC092076_173518491663e-40185-5351-118+2988Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence.
gb:AY064012_1565952101648e-40185-5351-118+2947Arabidopsis thaliana putative exonuclease (At1g54490) mRNA, complete cds.>gb:AY091411_1574611 Arabidopsis thaliana putat
pir|G96586|G96586111648e-40185-5351-118+2965hypothetical protein F20D21.30 [imported] - Arabidopsis thaliana>gb:AE005173_893347 Arabidopsis thaliana chromosome 1, b
gb:BX005124_2566974121609e-39185-5351-117+2517Zebrafish DNA sequence from clone CH211-284A16 in linkage group 20 Contains the 5' end of the xrn2 gene for 5'-3' exorib
gb:BC047182_2549846131609e-39185-5351-117+2540Danio rerio 5'-3' exoribonuclease 2, mRNA (cDNA clone MGC:55717 IMAGE:3816008), complete cds.
gb:AX887523_1482976141592e-38185-5351-117+2130Sequence 3386 from Patent EP1033401.
gb:AX877023_1476800151592e-38185-5351-117+2950Sequence 11928 from Patent EP1074617.
gb:CR861231_1185240161592e-38185-5351-117+2950Pongo pygmaeus mRNA; cDNA DKFZp459J063 (from clone DKFZp459J063).
sp|Q9H0D6|XRN2_HUMAN171592e-38185-5351-117+29505'-3' exoribonuclease 2 (EC 3.1.11.-).>gb:HSM801809_1186471 Homo sapiens mRNA; cDNA DKFZp434M182 (from clone DKFZp434M18
gb:BC086199_2564779181593e-38185-5351-117+2423Xenopus laevis hypothetical LOC495653, mRNA (cDNA clone IMAGE:7200695), partial cds.
gb:AK031247_1162361191593e-38185-5351-117+2952Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930437B06 product:5'-3' exoribonuc
pir|I49635|I49635201593e-38185-5351-117+2947mouse Dhm1 protein - mouse>gb:MUSDHM1P_2125668 Mouse mRNA for Dhm1 protein, complete cds.
sp|Q9DBR1|XRN2_MOUSE211593e-38185-5351-117+29515'-3' exoribonuclease 2 (EC 3.1.11.-) (Dhm1 protein).>gb:AK004800_1152604 Mus musculus adult male lung cDNA, RIKEN full-
gb:AJ720740_2502927221586e-38185-5351-117+2949Gallus gallus mRNA for hypothetical protein, clone 24h23.
gb:AF064257_1880351231586e-38185-5351-117+2950Homo sapiens Dhm1-like protein mRNA, complete cds.
pir|T27005|T27005241562e-37185-5351-117+2892hypothetical protein Y48B6A.3 - Caenorhabditis elegans>gb:CEY48B6A_1370244 Caenorhabditis elegans YAC Y48B6A, complete s
gb:AF152169_1886404251546e-37185-5351-117+2950Homo sapiens DHP protein mRNA, complete cds.
gb:AE014134_1127919261462e-34185-5351-118+2908Drosophila melanogaster chromosome 2L, complete sequence.>gb:AE003615_1218026 Drosophila melanogaster chromosome 2L, sec
gb:NCB7K22_1690203271402e-32185-5351-118+21072Neurospora crassa DNA linkage group II BAC clone B7K22.
gb:BX649607_1643500281353e-31185-5351-117+21058Aspergillus fumigatus BAC pilot project supercontig; segment 3/3.
sp|P40848|DHP1_SCHPO291341e-30185-5351-118+2991Protein dhp1.>pir|S43891|S43891 dna exoribonuclease Dhp1p - fission yeast (Schizosaccharomyces pombe)>gb:SPAC26A3_171745
gb:AE016820_1750257301324e-30185-5351-116+2945Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence.
gb:CR380958_1653508311316e-30185-5351-116+21018Candida glabrata strain CBS138 chromosome L complete sequence.
sp|Q02792|RAT1_YEAST321301e-29185-5351-116+21006Ribonucleic acid trafficking protein 1 (5'-3' exoribonuclease) (EC 3.1.11.-) (P116).>pir|S20126|S20126 exoribonuclease R
gb:CR382126_1658683331293e-29185-5351-116+2992Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis.
gb:AE017346_1757332341285e-29185-5351-122+21127Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence.
gb:CR382137_1670383351225e-27185-5351-113+21003Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii.
gb:AP005820_1858431361149e-25185-5291-107+2822Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16.
gb:CR382130_1662880371123e-24185-5351-117+21010Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
gb:AE017345_1756967381063e-22185-5351-102+21457Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence.
sp|P40383|EXO2_SCHPO391063e-22185-5351-100+21328Exonuclease II (EC 3.1.11.-) (Exo II) (P140).>pir|S78457|S78457 exonuclease II - fission yeast (Schizosaccharomyces pomb
gb:CEY39G8C_1369877401031e-21185-5351-100+21195Caenorhabditis elegans YAC Y39G8C, complete sequence.
pir|T26774|T26774411031e-21185-5351-100+21801hypothetical protein Y39G8C.b - Caenorhabditis elegans
gb:CR382129_1662242421032e-21185-5351-99+21526Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.
gb:PFA929356_1393315431032e-21185-5351-137+21311Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.
gb:AK096177_1914530441024e-21185-5351-100+2473Homo sapiens cDNA FLJ38858 fis, clone MESAN2011627, highly similar to 5'-3' exoribonuclease 1.
gb:DME242529_1378981451001e-20185-5351-100+21613Drosophila melanogaster mRNA for pacman 5'-3' exoribonuclease.
gb:AE014298_1126424461001e-20185-5351-100+21612Drosophila melanogaster chromosome X, complete sequence.>gb:AE003512_1213433 Drosophila melanogaster chromosome X, secti
pir|T30244|T30244471001e-20185-5351-100+21687phosphodiesterase I (EC 3.1.4.1) - mouse>gb:D88026_2112619 Mus musculus mRNA for Dhm2 protein, complete cds.
gb:HSM807042_2018540481002e-20185-5351-100+21706Homo sapiens mRNA; cDNA DKFZp686L17106 (from clone DKFZp686L17106); complete cds.
gb:BC048104_1984082491002e-20185-5351-100+2459Homo sapiens 5'-3' exoribonuclease 1, mRNA (cDNA clone IMAGE:4820049), complete cds.
gb:AY137776_1936948501002e-20185-5351-100+21706Homo sapiens DNA strand-exchange protein SEP1 mRNA, complete cds.
gb:CR857966_1182159511002e-20185-5351-100+2402Pongo pygmaeus mRNA; cDNA DKFZp469A0429 (from clone DKFZp469A0429).
gb:CR749518_1181105521002e-20185-5351-100+21694Homo sapiens mRNA; cDNA DKFZp686B22225 (from clone DKFZp686B22225).
gb:CR627396_1180772531002e-20185-5351-100+21694Homo sapiens mRNA; cDNA DKFZp686F19113 (from clone DKFZp686F19113).
pir|T30175|T30175541002e-20185-5351-100+21706exoribonuclease, variant 2 - mouse>gb:MM53EXO_2113761 M.musculus mRNA for 5'-3' exonuclease.
pir|T30174|T30174551002e-20185-5351-100+21719exoribonuclease, variant 1 - mouse>gb:MM53EXO_2113760 M.musculus mRNA for 5'-3' exonuclease.
gb:CR380958_165332656995e-20185-5351-101+21522Candida glabrata strain CBS138 chromosome L complete sequence.
pir|B90090|B9009057963e-19185-5351-96+2542very similar to mouse Dhm1 and Dhm2 [imported] - Guillardia theta nucleomorph>gb:AF165818_1773803 Guillardia theta nucle
gb:AC116979_120713958963e-19185-5351-99+21749Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.
sp|P22147|KEM1_YEAST59965e-19185-5351-100+21528Strand exchange protein 1 (KAR(-) enhancing mutation protein) (5'-3' exoribonuclease) (DNA strand transfer protein beta)
gb:CR382126_165934460894e-17185-5351-100+21453Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis.
gb:AE016817_174733861889e-17185-5351-100+21474Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence.
gb:BX538351_135885762856e-16185-5351-106+21572Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4.
gb:AE014186_93804263771e-13188-53546-144+2743Plasmodium falciparum 3D7 chromosome 11 complete sequence.>gb:AE014837_1228776 Plasmodium falciparum 3D7 chromosome 11 s
gb:CNS07EGI_137446564755e-13185-5351-96+2655chromosome IX of strain GB-M1 of Encephalitozoon cuniculi (Microspora).
gb:CR382135_166836465603e-08413-5351-41+21378Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii.
gb:AC117075_120771266496e-05320-53523-94+2379Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.
gb:AF303741_223144867471e-04185-5351-105+2624Chilo iridescent virus complete genome.
gb:S40947_17041313380.14402-61717-89-1191abscisic acid-and environmental stress-inducible protein [Medicago sativa=alfalfa, mRNA Partial, 829 nt].>gb:ALFESIPC_18
pir|A42844|A428444380.14402-61717-89-1191abscisic acid-and environmental stress-inducible protein - alfalfa (fragment)
gb:ALFESIPA_18189725360.53408-61724-99-1133Medicago sativa environmental stress-induced protein mRNA, 3' end.
pir|T09608|T096086360.53408-61724-99-1133environmental stress-induced protein - alfalfa (fragment)
gb:AB088097_18721087350.91342-602744-815-1940Homo sapiens FB19 gene for protein phosphatase 1, regulatory subunit 10, complete cds.>gb:AL662800_1931469 Human DNA seq
pir|JE0291|JE02918350.91342-602744-815-1940FB19 protein - human>gb:HSFB19_2013170 Homo sapiens fb19 mRNA.
sp|Q07202|CORA_MEDSA9351.2405-617114-190-1204Cold and drought-regulated protein CORA.>pir|T09592|T09592 protein corA, cold- and drought-regulated - alfalfa>gb:ALFCOR
pir|A39724|A3972410351.5330-48219-73-1320homeotic protein Hox A4 - human>gb:HUMHOX14_2032126 Human homeobox 1.4 protein mRNA, complete cds.
sp|Q00056|HXA4_HUMAN11351.5330-48219-73-1320Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).
gb:HSA271741_200187912342.0372-500322-357-1441Homo sapiens partial ILF3 gene for interleukin enhancer binding factor 3 (alternative transcripts drbp76, drbp76 gamma,
gb:F320227S21_199569713342.0372-500775-810-1894Homo sapiens NFAR protein (ILF3) gene, exon 21 and complete cds, alternatively spliced.
gb:BA000041_196627514342.0333-602760-849-1940Pan troglodytes DNA, major histocompatibility complex class I region.
sp|Q86YZ3|HORN_HUMAN15342.0348-671467-567-12850Hornerin.>gb:AL589986_1929248 Human DNA sequence from clone RP11-107M16 on chromosome 1 Contains the THH gene for tricho
gb:AC115598_120579816342.6351-641165-244-11264Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.
gb:AB113357_141071417333.4390-497751-788-1925Sus scrofa 433 kb genomic segment, located between the non-classical and classical SLA class I gene cluster, clone: BAC
gb:PFMAL4P2_139472418333.467-150336-363+11111Plasmodium falciparum MAL4P2.
gb:MMU504718_212182619334.5327-497748-817-1874Mus musculus mRNA for protein phosphatase I (CAT53 gene).
gb:AF040954_205195120334.5327-497748-815-1872Rattus norvegicus putative protein phosphatase 1 nuclear targeting subunit (PNUTS) mRNA, complete cds.
gb:AP005179_184887821334.5357-45222-53-11052Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0084L07.>gb:AP005877_1859502 Oryza sat
gb:AY069587_129431722334.5378-67180-180-1639Drosophila melanogaster LD33388 full insert cDNA.
gb:AY058785_129193923334.5378-671510-610-11068Drosophila melanogaster SD08329 full length cDNA.
gb:AE014296_113402724334.5378-671781-881-11340Drosophila melanogaster chromosome 3L, complete sequence.>gb:AE014296_1134028 Drosophila melanogaster chromosome 3L, com
gb:AE013599_113388025334.5372-617255-335-1342Drosophila melanogaster chromosome 2R, complete sequence.>gb:AE003465_1211179 Drosophila melanogaster chromosome 2R, sec
pir|B86429|B8642926334.5339-485229-279-1335F26G16.5 protein - Arabidopsis thaliana>gb:AE005172_891890 Arabidopsis thaliana chromosome 1, top arm complete sequence.
gb:BC005782_209016427335.9375-62991-175-1198Mus musculus cDNA clone MGC:12025 IMAGE:3603243, complete cds.
gb:AB128049_187397428335.9333-602761-850-1940Macaca mulatta genes, MHC class I region, partial and complete cds.
gb:AF067613_123802029335.9100-22215-55-3334Caenorhabditis elegans cosmid F56D6, complete sequence.
pir|B43306|B4330669332.1344-445100-133-2370probable hydro-lyase (EC 4.2.1.-) dnrJ - Streptomyces peucetius
sp|P25048|DNRJ_STRPE70332.1344-445100-133-2370Daunorubicin biosynthesis sensory transduction protein dnrJ.>gb:STMDNRI_192841 S.peucetius DnrI and DnrJ genes, complete
gb:AY438685_253255630327.7327-49781-139-1425Takifugu rubripes prion protein 2 (PrP2) mRNA, complete cds.
gb:AY188583_251793131327.7327-49780-138-1424Takifugu rubripes prion-like protein gene, complete cds.
gb:AE017345_175677032327.7339-491105-161-1441Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence.
gb:CR382130_166264833327.7339-50039-96-1443Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
gb:AE001362_93928071324.7323-535135-200+21181Plasmodium falciparum 3D7 chromosome 2 complete sequence.>gb:AE001380_1208591 Plasmodium falciparum 3D7 chromosome 2 sec
pir|A71621|A7162172324.7323-535142-207+21188protein with 5'-3' exonuclease domain (Kem-1 family) PFB0205c - malaria parasite (Plasmodium falciparum)
gb:AY673996_162151773326.269-14937-62+376Gracilaria tenuistipitata var. liui chloroplast, complete genome.
gb:CR628337_11362774326.2143-2237-33+2339Legionella pneumophila str. Lens complete genome.
gb:AE017354_45877375328.0143-22320-46+2352Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome.
gb:AB062788_119704968232.0371-397259-267+2634Babesia equi Be82 mRNA for protein 82, partial cds.