Clone JMFF010I11 [sequences]

previous contigF:000096 contigR:008653
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
gb:AP004669_184301241985e-50185-5411-119+21450.002365-733924-1067-31068Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11.
gb:AP003566_183093051985e-50185-5411-119+22450.002365-733920-1063-31064Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24.
gb:AF286719_178321311992e-50185-5411-119+21020Arabidopsis thaliana XRN3 (XRN3) mRNA, complete cds.
gb:AY136383_158188421992e-50185-5411-119+2763Arabidopsis thaliana unknown protein (At1g75660) mRNA, complete cds.>gb:BT000175_1634453 Arabidopsis thaliana unknown pr
pir|D96786|D9678631992e-50185-5411-119+21037protein F10A5.15 [imported] - Arabidopsis thaliana>gb:AE005173_895102 Arabidopsis thaliana chromosome 1, bottom arm comp
gb:AF286720_178321461792e-44185-5411-121+21012Arabidopsis thaliana XRN2 (XRN2) mRNA, complete cds.>gb:AK176100_1818088 Arabidopsis thaliana mRNA, complete cds, clone:
gb:AY091687_157469871792e-44185-5411-121+2813Arabidopsis thaliana AT5g42540/K16E1_1 mRNA, complete cds.>gb:AF367296_1791748 Arabidopsis thaliana AT5g42540/K16E1_1 mR
gb:AB022210_151496981792e-44185-5411-121+2746Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16E1.
gb:AC092076_173518491671e-40185-5411-120+2988Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence.
gb:AY064012_1565952101654e-40185-5411-120+2947Arabidopsis thaliana putative exonuclease (At1g54490) mRNA, complete cds.>gb:AY091411_1574611 Arabidopsis thaliana putat
pir|G96586|G96586111654e-40185-5411-120+2965hypothetical protein F20D21.30 [imported] - Arabidopsis thaliana>gb:AE005173_893347 Arabidopsis thaliana chromosome 1, b
gb:BX005124_2566974121624e-39185-5411-119+2517Zebrafish DNA sequence from clone CH211-284A16 in linkage group 20 Contains the 5' end of the xrn2 gene for 5'-3' exorib
gb:BC047182_2549846131624e-39185-5411-119+2540Danio rerio 5'-3' exoribonuclease 2, mRNA (cDNA clone MGC:55717 IMAGE:3816008), complete cds.
gb:AX887523_1482976141609e-39185-5411-119+2130Sequence 3386 from Patent EP1033401.
gb:AX877023_1476800151609e-39185-5411-119+2950Sequence 11928 from Patent EP1074617.
gb:CR861231_1185240161609e-39185-5411-119+2950Pongo pygmaeus mRNA; cDNA DKFZp459J063 (from clone DKFZp459J063).
sp|Q9H0D6|XRN2_HUMAN171609e-39185-5411-119+29505'-3' exoribonuclease 2 (EC 3.1.11.-).>gb:HSM801809_1186471 Homo sapiens mRNA; cDNA DKFZp434M182 (from clone DKFZp434M18
gb:BC086199_2564779181601e-38185-5411-119+2423Xenopus laevis hypothetical LOC495653, mRNA (cDNA clone IMAGE:7200695), partial cds.
gb:AK031247_1162361191601e-38185-5411-119+2952Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930437B06 product:5'-3' exoribonuc
pir|I49635|I49635201601e-38185-5411-119+2947mouse Dhm1 protein - mouse>gb:MUSDHM1P_2125668 Mouse mRNA for Dhm1 protein, complete cds.
sp|Q9DBR1|XRN2_MOUSE211601e-38185-5411-119+29515'-3' exoribonuclease 2 (EC 3.1.11.-) (Dhm1 protein).>gb:AK004800_1152604 Mus musculus adult male lung cDNA, RIKEN full-
gb:AJ720740_2502927221593e-38185-5411-119+2949Gallus gallus mRNA for hypothetical protein, clone 24h23.
gb:AF064257_1880351231593e-38185-5411-119+2950Homo sapiens Dhm1-like protein mRNA, complete cds.
pir|T27005|T27005241578e-38185-5411-119+2892hypothetical protein Y48B6A.3 - Caenorhabditis elegans>gb:CEY48B6A_1370244 Caenorhabditis elegans YAC Y48B6A, complete s
gb:AF152169_1886404251553e-37185-5411-119+2950Homo sapiens DHP protein mRNA, complete cds.
gb:AE014134_1127919261471e-34185-5411-120+2908Drosophila melanogaster chromosome 2L, complete sequence.>gb:AE003615_1218026 Drosophila melanogaster chromosome 2L, sec
gb:NCB7K22_1690203271417e-33185-5411-120+21072Neurospora crassa DNA linkage group II BAC clone B7K22.
gb:BX649607_1643500281371e-31185-5411-119+21058Aspergillus fumigatus BAC pilot project supercontig; segment 3/3.
sp|P40848|DHP1_SCHPO291355e-31185-5411-120+2991Protein dhp1.>pir|S43891|S43891 dna exoribonuclease Dhp1p - fission yeast (Schizosaccharomyces pombe)>gb:SPAC26A3_171745
gb:AE016820_1750257301332e-30185-5411-118+2945Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence.
gb:CR380958_1653508311323e-30185-5411-118+21018Candida glabrata strain CBS138 chromosome L complete sequence.
sp|Q02792|RAT1_YEAST321316e-30185-5411-118+21006Ribonucleic acid trafficking protein 1 (5'-3' exoribonuclease) (EC 3.1.11.-) (P116).>pir|S20126|S20126 exoribonuclease R
gb:CR382126_1658683331301e-29185-5411-118+2992Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis.
gb:AE017346_1757332341292e-29185-5411-124+21127Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence.
gb:CR382137_1670383351232e-27185-5411-115+21003Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii.
gb:AP005820_1858431361141e-24185-5411-112+2822Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16.
gb:CR382130_1662880371141e-24185-5411-119+21010Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
gb:AE017345_1756967381071e-22185-5411-104+21457Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence.
sp|P40383|EXO2_SCHPO391071e-22185-5411-102+21328Exonuclease II (EC 3.1.11.-) (Exo II) (P140).>pir|S78457|S78457 exonuclease II - fission yeast (Schizosaccharomyces pomb
gb:CEY39G8C_1369877401056e-22185-5411-102+21195Caenorhabditis elegans YAC Y39G8C, complete sequence.
pir|T26774|T26774411056e-22185-5411-102+21801hypothetical protein Y39G8C.b - Caenorhabditis elegans
gb:CR382129_1662242421041e-21185-5411-101+21526Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica.
gb:PFA929356_1393315431041e-21185-5411-139+21311Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.
gb:AK096177_1914530441032e-21185-5411-102+2473Homo sapiens cDNA FLJ38858 fis, clone MESAN2011627, highly similar to 5'-3' exoribonuclease 1.
gb:DME242529_1378981451025e-21185-5411-102+21613Drosophila melanogaster mRNA for pacman 5'-3' exoribonuclease.
gb:AE014298_1126424461025e-21185-5411-102+21612Drosophila melanogaster chromosome X, complete sequence.>gb:AE003512_1213433 Drosophila melanogaster chromosome X, secti
pir|T30244|T30244471016e-21185-5411-102+21687phosphodiesterase I (EC 3.1.4.1) - mouse>gb:D88026_2112619 Mus musculus mRNA for Dhm2 protein, complete cds.
gb:HSM807042_2018540481018e-21185-5411-102+21706Homo sapiens mRNA; cDNA DKFZp686L17106 (from clone DKFZp686L17106); complete cds.
gb:BC048104_1984082491018e-21185-5411-102+2459Homo sapiens 5'-3' exoribonuclease 1, mRNA (cDNA clone IMAGE:4820049), complete cds.
gb:AY137776_1936948501018e-21185-5411-102+21706Homo sapiens DNA strand-exchange protein SEP1 mRNA, complete cds.
gb:CR857966_1182159511018e-21185-5411-102+2402Pongo pygmaeus mRNA; cDNA DKFZp469A0429 (from clone DKFZp469A0429).
gb:CR749518_1181105521018e-21185-5411-102+21694Homo sapiens mRNA; cDNA DKFZp686B22225 (from clone DKFZp686B22225).
gb:CR627396_1180772531018e-21185-5411-102+21694Homo sapiens mRNA; cDNA DKFZp686F19113 (from clone DKFZp686F19113).
pir|T30175|T30175541018e-21185-5411-102+21706exoribonuclease, variant 2 - mouse>gb:MM53EXO_2113761 M.musculus mRNA for 5'-3' exonuclease.
pir|T30174|T30174551018e-21185-5411-102+21719exoribonuclease, variant 1 - mouse>gb:MM53EXO_2113760 M.musculus mRNA for 5'-3' exonuclease.
gb:CR380958_1653326561002e-20185-5411-103+21522Candida glabrata strain CBS138 chromosome L complete sequence.
pir|B90090|B9009057971e-19185-5411-98+2542very similar to mouse Dhm1 and Dhm2 [imported] - Guillardia theta nucleomorph>gb:AF165818_1773803 Guillardia theta nucle
gb:AC116979_120713958972e-19185-5411-101+21749Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.
sp|P22147|KEM1_YEAST59972e-19185-5411-102+21528Strand exchange protein 1 (KAR(-) enhancing mutation protein) (5'-3' exoribonuclease) (DNA strand transfer protein beta)
gb:CR382126_165934460927e-18323-54128-102+21453Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis.
gb:BX538351_135885761902e-17185-5411-108+21572Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4.
gb:AE016817_174733862893e-17323-54128-102+21474Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence.
gb:AE014186_93804263793e-14308-54168-146+2743Plasmodium falciparum 3D7 chromosome 11 complete sequence.>gb:AE014837_1228776 Plasmodium falciparum 3D7 chromosome 11 s
gb:CNS07EGI_137446564764e-13329-54128-98+2655chromosome IX of strain GB-M1 of Encephalitozoon cuniculi (Microspora).
gb:CR382135_166836465641e-09413-5411-43+21378Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii.
gb:AF303741_223144866528e-06185-5411-107+2624Chilo iridescent virus complete genome.
gb:AC117075_120771267502e-05320-53823-95+2379Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.
gb:S40947_17041313380.18443-65817-89-3191abscisic acid-and environmental stress-inducible protein [Medicago sativa=alfalfa, mRNA Partial, 829 nt].>gb:ALFESIPC_18
pir|A42844|A428444380.18443-65817-89-3191abscisic acid-and environmental stress-inducible protein - alfalfa (fragment)
gb:AF238886_4915835370.41395-769152-264-3296Bacillus cereus strain ATCC 11778 putative VrrB (vrrB) gene, partial cds.
gb:ALFESIPA_18189726360.70449-65824-99-3133Medicago sativa environmental stress-induced protein mRNA, 3' end.
gb:AF507059_18069097360.70428-76944-157-3260Phytophthora infestans mating-induced protein M96 mRNA, complete cds.
pir|T09608|T096088360.70449-65824-99-3133environmental stress-induced protein - alfalfa (fragment)
sp|P04929|HRPX_PLALO9360.70611-772185-238-3351Histidine-rich glycoprotein precursor.>pir|A22692|KGZQHL histidine-rich glycoprotein precursor - Plasmodium lophurae>gb:
gb:AY382309_194882410360.91368-772133-245-3360Lemur catta sperm ion channel (CATSPER1) gene, exon 1 and partial cds.
gb:AY069587_129431711360.91419-71579-180-3639Drosophila melanogaster LD33388 full insert cDNA.
gb:AY058785_129193912360.91419-715509-610-31068Drosophila melanogaster SD08329 full length cDNA.
gb:AE014296_113402713360.91419-715780-881-31340Drosophila melanogaster chromosome 3L, complete sequence.>gb:AE014296_1134028 Drosophila melanogaster chromosome 3L, com
gb:AF238888_49158514360.91383-772137-263-3294Bacillus cereus strain ATCC 43881 putative VrrB (vrrB) gene, partial cds.
gb:AB088097_187210815351.2383-643744-815-3940Homo sapiens FB19 gene for protein phosphatase 1, regulatory subunit 10, complete cds.>gb:AL662800_1931469 Human DNA seq
pir|JE0291|JE029116351.2383-643744-815-3940FB19 protein - human>gb:HSFB19_2013170 Homo sapiens fb19 mRNA.
gb:AB104446_187357017351.6365-766266-404-3493Homo sapiens mRNA for hornerin, partial cds.
sp|Q07202|CORA_MEDSA18351.6446-658114-190-3204Cold and drought-regulated protein CORA.>pir|T09592|T09592 protein corA, cold- and drought-regulated - alfalfa>gb:ALFCOR
gb:AF243382_125490219352.0632-772575-621-31548Drosophila melanogaster cytoplasmic protein encore (enc) mRNA, complete cds.
gb:AE014296_113460320352.0632-772724-770-31823Drosophila melanogaster chromosome 3L, complete sequence.>gb:AE003479_1211902 Drosophila melanogaster chromosome 3L, sec
pir|A39724|A3972421352.0371-52319-73-3320homeotic protein Hox A4 - human>gb:HUMHOX14_2032126 Human homeobox 1.4 protein mRNA, complete cds.
sp|Q00056|HXA4_HUMAN22352.0371-52319-73-3320Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).
sp|Q86YZ3|HORN_HUMAN23352.0365-7662623-2761-32850Hornerin.>gb:AL589986_1929248 Human DNA sequence from clone RP11-107M16 on chromosome 1 Contains the THH gene for tricho
sp|Q8MSX1|ENC_DROME24352.0632-772719-765-31818Encore protein.>gb:AE014296_1134604 Drosophila melanogaster chromosome 3L, complete sequence.>gb:AE003479_1211903 Drosop
gb:BT007905_215083725342.7389-766117-248-3527Synthetic construct Homo sapiens fusion, derived from t(12;16) malignant liposarcoma mRNA, partial cds.
gb:HSA271741_200187926342.7413-541322-357-3441Homo sapiens partial ILF3 gene for interleukin enhancer binding factor 3 (alternative transcripts drbp76, drbp76 gamma,
gb:F320227S21_199569727342.7413-541775-810-3894Homo sapiens NFAR protein (ILF3) gene, exon 21 and complete cds, alternatively spliced.
gb:BC026062_197867828342.7389-766117-248-3526Homo sapiens fusion (involved in t(12;16) in malignant liposarcoma), mRNA (cDNA clone MGC:16383 IMAGE:3937437), complete
gb:BA000041_196627529342.7374-643760-849-3940Pan troglodytes DNA, major histocompatibility complex class I region.
gb:AF071213_188080530342.7389-766116-247-3525Homo sapiens FUS/TLS protein gene, alternatively spliced products, exons 1 through 15 and complete cds.>gb:HSFUSA_201329
gb:AF043907_123599831342.7371-76936-152-3254Hydra magnipapillata spinalin mRNA, complete cds.
pir|S33798|S3379832342.7389-766117-248-3462FUS/CHOP mutant fusion protein - human>gb:HSFUSCPA_2013296 Homo sapiens mRNA for FUS-CHOP protein fusion.>gb:S62138_2040
pir|T27544|T2754433342.7602-778352-414-3428zinc resistance protein homolog - Caenorhabditis elegans>gb:U13642_1401829 Caenorhabditis elegans cosmid ZC395, complete
sp|P35637|FUS_HUMAN34342.7389-766117-248-3526RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS) (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing
pir|T10468|T1046835343.5602-778191-253-3264histidine/alanine-rich protein III - malaria parasite (Plasmodium falciparum)>gb:PFU69552_1395103 Plasmodium falciparum
gb:AE001362_93928068341.3323-538135-201+21181Plasmodium falciparum 3D7 chromosome 2 complete sequence.>gb:AE001380_1208591 Plasmodium falciparum 3D7 chromosome 2 sec
pir|A71621|A7162169341.3323-538142-208+21188protein with 5'-3' exonuclease domain (Kem-1 family) PFB0205c - malaria parasite (Plasmodium falciparum)
gb:AB113357_141071436334.5431-538751-788-3925Sus scrofa 433 kb genomic segment, located between the non-classical and classical SLA class I gene cluster, clone: BAC
gb:PFMAL4P2_139472437334.5108-191336-363+31111Plasmodium falciparum MAL4P2.
pir|T45059|T4505938334.5434-772612-695-3735hypothetical protein Y39B6B.gg [imported] - Caenorhabditis elegans>gb:CEY39B6A_1369836 Caenorhabditis elegans YAC Y39B6A
gb:MUSFILB_212587839335.9389-74567-164-3250Mouse filaggrin gene, partial cds (type B repeat subunit).
gb:MMU504718_212182640335.9368-538748-817-3874Mus musculus mRNA for protein phosphatase I (CAT53 gene).
gb:AF040954_205195141335.9368-538748-815-3872Rattus norvegicus putative protein phosphatase 1 nuclear targeting subunit (PNUTS) mRNA, complete cds.
gb:AP005179_184887842335.9398-49322-53-31052Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0084L07.>gb:AP005877_1859502 Oryza sat
gb:AE016817_174737543335.9608-742261-309-3547Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence.
gb:CEK08E5_136551244335.9617-7723031-3087-33183Caenorhabditis elegans cosmid K08E5, complete sequence.>gb:CET20G5_1367875 Caenorhabditis elegans cosmid T20G5, complete
gb:AK076261_117132845335.9389-74561-158-3270Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632401P04 product:filaggrin, full inser
gb:AE013599_113388046335.9413-658255-335-3342Drosophila melanogaster chromosome 2R, complete sequence.>gb:AE003465_1211179 Drosophila melanogaster chromosome 2R, sec
gb:AF238887_49158447335.9383-757116-244-3273Bacillus cereus strain ATCC 31293 putative VrrB (vrrB) gene, partial cds.
gb:AE017355_46575948335.9392-77298-216-3248Bacillus thuringiensis serovar konkukian str. 97-27, complete genome.
gb:PMPPAA_15890049335.9605-7759-72-399Proteus mirabilis ppaA gene and orf1.
pir|B35026|B3502650335.9389-74567-164-3250filaggrin B - mouse (fragment)
pir|B86429|B8642951335.9380-526229-279-3335F26G16.5 protein - Arabidopsis thaliana>gb:AE005172_891890 Arabidopsis thaliana chromosome 1, top arm complete sequence.
pir|S42373|S4237352335.9617-7722899-2955-33051hypothetical protein T20G5.3 - Caenorhabditis elegans
sp|P34576|MUA3_CAEEL53335.9617-7723615-3671-33767Transmembrane cell adhesion receptor mua-3 precursor.>gb:AF139060_1244237 Caenorhabditis elegans transmembrane cell adhe
gb:BC005782_209016454337.7416-67091-175-3198Mus musculus cDNA clone MGC:12025 IMAGE:3603243, complete cds.
gb:AL591136_207054555337.7611-73612-51-3692Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok
gb:AK122494_206915956337.7611-73636-75-3716Mus musculus mRNA for mKIAA1321 protein.
gb:AB128049_187397457337.7374-643761-850-3940Macaca mulatta genes, MHC class I region, partial and complete cds.
gb:AF067613_123802058337.7141-26315-55-2334Caenorhabditis elegans cosmid F56D6, complete sequence.
pir|B43306|B4330671332.1344-445100-133-3370probable hydro-lyase (EC 4.2.1.-) dnrJ - Streptomyces peucetius
sp|P25048|DNRJ_STRPE72332.1344-445100-133-3370Daunorubicin biosynthesis sensory transduction protein dnrJ.>gb:STMDNRI_192841 S.peucetius DnrI and DnrJ genes, complete
gb:AY673996_162151773326.269-14937-62+376Gracilaria tenuistipitata var. liui chloroplast, complete genome.
gb:AC116986_120746474328.1437-54129-68+2930Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.
gb:AB062788_119704970232.0371-397259-267+2634Babesia equi Be82 mRNA for protein 82, partial cds.