Clone JMFS097F05 [sequences]

contigF:010525 contigR:
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
gb|AGT50253.1|195.96e-19483-62620-67+31127phytochrome A1 [Ipomoea batatas]
gb|AJA72481.1|295.96e-19483-62620-67+31127phytochrome A [Ipomoea purpurea]
gb|AGT50255.1|395.96e-19483-62620-67+31127phytochrome A3 [Ipomoea batatas]
gb|AGT50254.1|495.96e-19483-62620-67+31127phytochrome A2 [Ipomoea batatas]
gb|AAR08425.1|591.32e-17483-62620-67+31119phytochrome A [Cuscuta pentagona]
ref|XP_006339917.1|684.07e-15483-62620-67+31123PREDICTED: type A phytochrome [Solanum tuberosum]
sp|P30733.2|PHYA_SOLTU784.07e-15483-62620-67+31123RecName: Full=Phytochrome A [Solanum tuberosum] gb|AAB21533.2| type A phytochrome [Solanum tuberosum]
ref|NP_001234490.1|880.96e-14483-62620-67+31123alternative transcript type 3 [Solanum lycopersicum] ref|XP_010327391.1| PREDICTED: alternative transcript type 3 isofor
ref|NP_001275384.1|979.71e-13483-62620-67+31123phytochrome A [Solanum tuberosum] gb|ABA46868.1| phytochrome A [Solanum tuberosum]
sp|P33530.1|PHYA1_TOBAC1078.63e-13483-62620-67+31124RecName: Full=Phytochrome A1 [Nicotiana tabacum] emb|CAA47284.1| type-A phytochrome [Nicotiana tabacum]
ref|XP_009769439.1|1178.63e-13483-62620-67+31124PREDICTED: phytochrome A1 [Nicotiana sylvestris] ref|XP_009769440.1| PREDICTED: phytochrome A1 [Nicotiana sylvestris]
ref|XP_009622127.1|1278.63e-13483-62620-67+31123PREDICTED: phytochrome A1 [Nicotiana tomentosiformis] ref|XP_009622128.1| PREDICTED: phytochrome A1 [Nicotiana tomentosi
ref|XP_010247866.1|1377.86e-13483-62620-67+31132PREDICTED: phytochrome A [Nelumbo nucifera]
dbj|BAM36554.1|1476.32e-12483-62620-67+31124phytochrome A [Fragaria x ananassa]
ref|XP_004302312.1|1575.92e-12483-62620-67+31124PREDICTED: phytochrome A [Fragaria vesca subsp. vesca]
gb|AAR08426.1|1675.93e-12483-62620-67+31123phytochrome A [Orobanche minor]
dbj|BAH79243.1|1775.14e-12483-62620-67+31122phytochrome A, partial [Cardamine resedifolia]
dbj|BAH79237.1|1875.14e-12483-62620-67+31122phytochrome A, partial [Cardamine nipponica]
dbj|BAH79235.1|1975.14e-12483-62620-67+31122phytochrome A, partial [Cardamine nipponica]
dbj|BAH79236.1|2075.14e-12483-62620-67+31122phytochrome A, partial [Cardamine nipponica]
gb|AHM26368.1|2175.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea] gb|AHM26383.1| light-labil
ref|XP_002892510.1|2275.14e-12483-62620-67+31122hypothetical protein ARALYDRAFT_471053 [Arabidopsis lyrata subsp. lyrata] gb|EFH68769.1| hypothetical protein ARALYDRAF
dbj|BAH79238.1|2375.14e-12483-62620-67+31122phytochrome A, partial [Cardamine nipponica]
ref|XP_010458244.1|2475.14e-12483-62620-67+31122PREDICTED: phytochrome A [Camelina sativa] ref|XP_010458246.1| PREDICTED: phytochrome A [Camelina sativa] ref|XP_0104582
gb|AHM26376.1|2575.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26359.1|2675.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26351.1|2775.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26347.1|2875.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea] gb|AHM26349.1| light-labil
dbj|BAA99408.1|2975.14e-12483-62620-67+31122phytochrome A [Armoracia rusticana]
gb|AHM26381.1|3075.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
emb|CDX93501.1|3175.14e-12483-62699-146+31202BnaA06g05470D [Brassica napus]
gb|AHM26384.1|3275.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26367.1|3375.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26356.1|3475.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea] gb|AHM26357.1| light-labil
gb|AHM26352.1|3575.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea] gb|AHM26362.1| light-labil
ref|XP_006306617.1|3675.14e-12483-62620-67+31122hypothetical protein CARUB_v10008141mg [Capsella rubella] gb|EOA39515.1| hypothetical protein CARUB_v10008141mg [Capsell
gb|AHM26375.1|3775.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26371.1|3875.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26370.1|3975.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26385.1|4075.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26382.1|4175.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26369.1|4275.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
ref|XP_006417561.1|4375.14e-12483-62620-67+31122hypothetical protein EUTSA_v10006625mg [Eutrema salsugineum] ref|XP_006417562.1| hypothetical protein EUTSA_v10006625mg
gb|AHM26386.1|4475.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26380.1|4575.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26379.1|4675.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
gb|AHM26373.1|4775.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea] gb|AHM26374.1| light-labil
gb|AHM26348.1|4875.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea] gb|AHM26354.1| light-labil
emb|CAA35221.1|4975.14e-12483-62620-67+31122unnamed protein product [Arabidopsis thaliana]
ref|XP_010490131.1|5075.14e-12483-62620-67+31122PREDICTED: phytochrome A-like [Camelina sativa] ref|XP_010490133.1| PREDICTED: phytochrome A-like [Camelina sativa] ref|
gb|AHM26372.1|5175.14e-12483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea]
ref|NP_172428.1|5275.14e-12483-62620-67+31122phytochrome A [Arabidopsis thaliana] sp|P14712.2|PHYA_ARATH RecName: Full=Phytochrome A; AltName: Full=Protein ELONGATED
dbj|BAA99409.1|5375.15e-12483-62620-67+31122phytochrome A [Armoracia rusticana]
dbj|BAA99410.1|5475.15e-12483-62620-67+31122phytochrome A [Armoracia rusticana]
gb|KDP23318.1|5575.15e-12483-62621-68+31126hypothetical protein JCGZ_23151 [Jatropha curcas]
emb|CDY50896.1|5674.38e-12483-62657-104+31161BnaCnng19880D [Brassica napus]
gb|KDO56363.1|5774.38e-12483-62620-67+31052hypothetical protein CISIN_1g001235mg [Citrus sinensis]
ref|XP_010094926.1|5874.39e-12483-62620-67+31130Phytochrome type A [Morus notabilis] gb|EXB57569.1| Phytochrome type A [Morus notabilis]
gb|KDO56362.1|5974.39e-12483-62620-67+31117hypothetical protein CISIN_1g001235mg [Citrus sinensis]
ref|XP_006423945.1|6074.39e-12483-62620-67+31117hypothetical protein CICLE_v10027712mg [Citrus clementina] ref|XP_006480323.1| PREDICTED: phytochrome A-like [Citrus sin
ref|XP_008246343.1|6173.99e-12483-62620-67+31124PREDICTED: phytochrome A [Prunus mume]
ref|XP_009148254.1|6273.91e-11483-62620-67+31123PREDICTED: phytochrome A [Brassica rapa]
dbj|BAH79241.1|6373.61e-11483-62620-67+31122phytochrome A, partial [Cardamine nipponica]
dbj|BAH79239.1|6473.62e-11483-62620-67+31122phytochrome A, partial [Cardamine nipponica] dbj|BAH79240.1| phytochrome A, partial [Cardamine nipponica] dbj|BAH79242.1
gb|AHM26377.1|6573.62e-11483-62620-67+31122light-labile cytoplasmic red/far-red light photoreceptor [Arabidopsis lyrata subsp. petraea] gb|AHM26378.1| light-labil
ref|XP_009337858.1|6673.22e-11483-62620-67+31123PREDICTED: phytochrome A-like [Pyrus x bretschneideri]
sp|P06592.1|PHYA_CUCPE6772.82e-11486-62621-67+31124RecName: Full=Phytochrome A [Cucurbita pepo] gb|AAA33115.1| phytochrome [Cucurbita pepo] prf||1303260A phytochrome
gb|AAR08427.1|6871.67e-11483-62620-67+31130phytochrome A [Monotropastrum globosum]
gb|KJB82600.1|6971.28e-11483-62620-63+31122hypothetical protein B456_013G203900 [Gossypium raimondii]
gb|KHG03686.1|7071.29e-11483-62620-63+31122Phytochrome A -like protein [Gossypium arboreum]
sp|P93673.1|PHYA_LATSA7170.91e-10483-62620-67+31124RecName: Full=Phytochrome type A [Lathyrus sativus] gb|AAB47994.1| phytochrome type A [Lathyrus sativus]
ref|XP_007204957.1|7270.51e-10483-62620-67+31055hypothetical protein PRUPE_ppa000643mg [Prunus persica] gb|EMJ06156.1| hypothetical protein PRUPE_ppa000643mg [Prunus pe
gb|AHZ89697.1|7370.52e-10483-62620-67+31124phytochrome A [Dimocarpus longan]
dbj|BAM67032.1|7470.12e-10483-62620-67+31121phytochrome a [Chrysanthemum seticuspe f. boreale]
gb|KFK43262.1|7569.33e-10483-62620-67+31122phytochrome a [Arabis alpina]
ref|XP_002512596.1|7667.41e-09483-62620-67+31124phytochrome A, putative [Ricinus communis] gb|EEF50048.1| phytochrome A, putative [Ricinus communis]
ref|XP_010549119.1|7764.31e-08483-62620-69+31124PREDICTED: phytochrome A-like [Tarenaya hassleriana] ref|XP_010549127.1| PREDICTED: phytochrome A-like [Tarenaya hassler
ref|XP_004162532.1|7864.31e-08486-62621-67+31123PREDICTED: LOW QUALITY PROTEIN: phytochrome A-like [Cucumis sativus]
gb|ACV87353.1|7964.31e-08483-62620-65+31130phytochrome A [Aquilegia formosa]
ref|XP_004146753.1|8063.91e-08486-62621-67+31123PREDICTED: phytochrome A-like [Cucumis sativus] gb|KGN47791.1| hypothetical protein Csa_6G403570 [Cucumis sativus]
ref|XP_008464786.1|8163.92e-08486-626115-161+31217PREDICTED: phytochrome A [Cucumis melo]
emb|CDY22632.1|8263.23e-08489-62623-70+31123BnaC08g42660D [Brassica napus]
gb|AAO86645.1|8463.23e-08483-62620-66+31122PHYA4 photoreceptor [Stellaria longipes]
gb|AAO86643.1|8362.83e-08483-62620-66+3935PHYA2 photoreceptor [Stellaria longipes]
ref|XP_009118306.1|8562.84e-08489-62623-70+31121PREDICTED: phytochrome A-like [Brassica rapa] ref|XP_009118307.1| PREDICTED: phytochrome A-like [Brassica rapa] ref|XP_0
emb|CDY06362.1|8662.84e-08489-62623-70+31121BnaA09g48410D [Brassica napus]
gb|AAO86644.1|8762.45e-08483-62620-66+31123PHYA3 photoreceptor [Stellaria longipes]
gb|EYU35379.1|8861.68e-08483-62620-70+31129hypothetical protein MIMGU_mgv1a000476mg [Erythranthe guttata]
gb|EPS59844.1|8961.69e-08489-62621-67+31123phytochrome [Genlisea aurea]
gb|EYU19354.1|9061.69e-08483-62620-69+31125hypothetical protein MIMGU_mgv1a000485mg [Erythranthe guttata]
gb|AAQ11871.1|9161.21e-07483-62620-66+31122phytochrome A1 [Stellaria longipes]
ref|XP_006840411.1|9260.82e-07486-62321-65+31123hypothetical protein AMTR_s00045p00153850 [Amborella trichopoda] gb|ERN02086.1| hypothetical protein AMTR_s00045p0015385
ref|XP_011092216.1|9358.97e-07486-62621-67+31122PREDICTED: phytochrome A [Sesamum indicum] ref|XP_011092218.1| PREDICTED: phytochrome A [Sesamum indicum]
gb|AHZ63971.1|9457.03e-06483-62621-68+31121phytochrome [Encephalartos barteri]
sp|P06595.3|PHYA5_AVESA9555.86e-06483-62320-66+3495RecName: Full=Phytochrome A type 5; Short=AP5, partial [Avena sativa] emb|CAA27001.1| unnamed protein product [Avena sa
gb|AEK06025.1|9655.87e-06483-6261-48+31090phytochrome A, partial [Populus balsamifera]
sp|P06593.3|PHYA3_AVESA9755.87e-06483-62320-66+31129RecName: Full=Phytochrome A type 3; Short=AP3 [Avena sativa] emb|CAA26999.1| unnamed protein product [Avena sativa]
gb|AAA76820.1|9855.87e-06483-62320-66+31129phytochrome [Avena sativa]
gb|AEK06022.1|9955.87e-06483-6261-48+31090phytochrome A, partial [Populus balsamifera] gb|AEK06024.1| phytochrome A, partial [Populus balsamifera] gb|AEK06026.1|
gb|AEK06017.1|10055.87e-06483-6261-48+31090phytochrome A, partial [Populus balsamifera] gb|AEK06018.1| phytochrome A, partial [Populus balsamifera] gb|AEK06019.1|
gb|AEK06016.1|10155.88e-06483-6261-48+31090phytochrome A, partial [Populus balsamifera]
gb|AEA50880.1|10255.59e-06483-62620-67+3958phyA [Populus tremula]
sp|O49934.1|PHYA_POPTM10355.59e-06483-62620-67+31125RecName: Full=Phytochrome A [Populus tremuloides] emb|CAA04679.1| phytochrome A [Populus tremula x Populus tremuloides]
gb|AEK26583.1|10455.11e-05483-62620-67+31109phytochrome A [Populus tremula]
ref|XP_002318913.1|10555.11e-05483-62620-67+31126phytochrome A family protein [Populus trichocarpa] gb|EEE94836.1| phytochrome A family protein [Populus trichocarpa]
ref|XP_008775174.1|10654.72e-05489-62622-66+31128PREDICTED: phytochrome A [Phoenix dactylifera]
ref|XP_004981958.1|10754.72e-05483-62322-68+31131PREDICTED: phytochrome a-like isoform X1 [Setaria italica] ref|XP_004981959.1| PREDICTED: phytochrome a-like isoform X2
emb|CDG41614.1|10854.32e-05483-62620-64+3960Phytochrome A [Rhazya stricta]
ref|XP_007145064.1|10954.32e-05483-62620-67+31123hypothetical protein PHAVU_007G206800g [Phaseolus vulgaris] ref|XP_007145065.1| hypothetical protein PHAVU_007G206800g [
ref|XP_007163278.1|11054.32e-05489-62626-74+31130hypothetical protein PHAVU_001G221100g [Phaseolus vulgaris] gb|ESW35272.1| hypothetical protein PHAVU_001G221100g [Phase
ref|XP_010914830.1|11154.32e-05483-62620-66+31122PREDICTED: phytochrome A isoform X2 [Elaeis guineensis]
ref|XP_010914825.1|11254.32e-05483-62620-66+31128PREDICTED: phytochrome A isoform X1 [Elaeis guineensis] ref|XP_010914826.1| PREDICTED: phytochrome A isoform X1 [Elaeis
gb|AHZ63962.1|11353.93e-05483-58122-54+31120phytochrome [Podocarpus rubens]
ref|XP_010037943.1|11453.93e-05489-62622-67+31130PREDICTED: phytochrome A [Eucalyptus grandis] ref|XP_010037952.1| PREDICTED: phytochrome A [Eucalyptus grandis] gb|KCW84
sp|P55141.1|PHYA_PETCR11553.54e-05483-58420-52+31129RecName: Full=Phytochrome A [Petroselinum crispum] emb|CAA53165.1| phytochrome A [Petroselinum crispum]
sp|P93526.1|PHYA_SORBI11653.54e-05483-62322-68+31131RecName: Full=Phytochrome a [Sorghum bicolor] gb|AAB41397.1| phytochrome A [Sorghum bicolor] gb|AAR30883.1| phytochrome
ref|XP_002463975.1|11753.54e-05483-62322-68+31131hypothetical protein SORBIDRAFT_01g009930 [Sorghum bicolor] gb|EER90973.1| hypothetical protein SORBIDRAFT_01g009930 [So
gb|AAR30889.1|11853.54e-05483-62322-68+31131phytochrome A [Sorghum bicolor] gb|AAR30892.1| phytochrome A [Sorghum arundinaceum]
gb|AAR30891.1|11953.54e-05483-62322-68+31131phytochrome A [Sorghum arundinaceum]
gb|AAR30884.1|12053.54e-05483-62322-68+31131phytochrome A [Sorghum bicolor]
gb|AAR30885.1|12153.54e-05483-62322-68+31131phytochrome A [Sorghum bicolor] gb|AAR30886.1| phytochrome A [Sorghum bicolor]
ref|XP_010544123.1|12253.15e-05483-62620-67+31121PREDICTED: phytochrome A [Tarenaya hassleriana]
ref|XP_011023900.1|12353.15e-05483-62320-66+31126PREDICTED: phytochrome A [Populus euphratica]
ref|XP_008665307.1|12453.16e-05483-62322-68+31131PREDICTED: phytochrome A-like [Zea mays] ref|XP_008665308.1| PREDICTED: phytochrome A-like [Zea mays] ref|XP_008665309.1
ref|XP_006357639.1|12552.87e-05483-58424-57+31120PREDICTED: phytochrome C-like isoform X1 [Solanum tuberosum]
ref|XP_004494497.1|12652.87e-05483-62637-87+31138PREDICTED: phytochrome A-like isoform X1 [Cicer arietinum]
ref|XP_004494498.1|12752.88e-05483-62621-71+31122PREDICTED: phytochrome A-like isoform X2 [Cicer arietinum]
gb|AHZ63967.1|12852.01e-04483-59620-57+31120phytochrome [Encephalartos barteri]
dbj|BAP76064.1|12952.01e-04483-58120-52+31117putative PHYN2 [Cryptomeria japonica]
sp|P06594.3|PHYA4_AVESA13052.02e-04489-62322-66+31129RecName: Full=Phytochrome A type 4; Short=AP4 [Avena sativa] emb|CAA27000.1| unnamed protein product [Avena sativa]
ref|XP_009366001.1|13151.62e-04483-62620-67+31125PREDICTED: phytochrome A-like [Pyrus x bretschneideri] ref|XP_009366002.1| PREDICTED: phytochrome A-like [Pyrus x bretsc
ref|XP_002278610.1|13251.62e-04483-62620-66+31124PREDICTED: phytochrome A1 [Vitis vinifera] ref|XP_010659783.1| PREDICTED: phytochrome A1 [Vitis vinifera] emb|CAN76586.1
gb|ACC60969.1|13351.62e-04483-62620-66+31124phytochrome A [Vitis riparia]
gb|KHG28726.1|13451.22e-04483-62620-63+31123Phytochrome A -like protein [Gossypium arboreum]
dbj|BAP91201.1|13651.22e-04486-62321-67+31130phytochrome A CDS [Hordeum bulbosum]
ref|XP_003560548.1|13751.23e-04483-62322-68+31131PREDICTED: phytochrome A type 3 [Brachypodium distachyon] ref|XP_010230771.1| PREDICTED: phytochrome A type 3 [Brachypod
ref|XP_006650506.1|13851.23e-04489-62324-68+31128PREDICTED: phytochrome A-like [Oryza brachyantha]
ref|XP_008464788.1|13950.83e-04486-60829-69+31153PREDICTED: phytochrome A-like [Cucumis melo] ref|XP_008464789.1| PREDICTED: phytochrome A-like [Cucumis melo]
ref|XP_007031301.1|14050.83e-04483-62620-63+31121Phytochrome A [Theobroma cacao] gb|EOY11803.1| Phytochrome A [Theobroma cacao]
ref|XP_009594664.1|14150.16e-04483-58424-57+31121PREDICTED: phytochrome C [Nicotiana tomentosiformis]
ref|XP_009778074.1|14349.77e-04483-58424-57+31121PREDICTED: phytochrome C [Nicotiana sylvestris]
gb|AAR30895.1|14449.70.001489-62324-68+31131phytochrome A [Sorghum arundinaceum]
gb|AAR30893.1|14549.70.001489-62324-68+31131phytochrome A [Sorghum arundinaceum] gb|AAR30894.1| phytochrome A [Sorghum arundinaceum] gb|AAR30898.1| phytochrome A [S
gb|AAR30888.1|14649.70.001489-62324-68+31131phytochrome A [Sorghum bicolor] gb|AAR30896.1| phytochrome A [Sorghum arundinaceum] gb|AAR30897.1| phytochrome A [Sorghu
gb|AAR30890.1|14749.70.001489-62324-68+31131phytochrome A [Sorghum arundinaceum]
gb|AAR30899.1|14849.70.001489-62324-68+31131phytochrome A [Sorghum propinquum]
gb|AAR30887.1|14949.70.0011131phytochrome A [Sorghum bicolor]
gb|ACU21559.1|13549.32e-04483-62620-67+3159phytochrome A [Medicago sativa]
ref|XP_008657306.1|14249.37e-04489-62324-68+3242PREDICTED: phytochrome A type 5-like [Zea mays]