BLAST results

[Archaea] [Bacteria] [Eukaryota] [Viruses] [Metazoa] [green plants] [higher plants] [Others]
BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig13797
         (1179 letters)

Database: nr-aa:  Non-redundant protein sequence database Release
05-06-11 
           1,806,583 sequences; 581,917,975 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb:ATAC012395_1543463 Arabidopsis thaliana chromosome III BAC T1...    44   0.005   
pir|T04704|T04704 hypothetical protein F4B14.210 - Arabidopsis t...    34   6.5     Arabidopsis thaliana [mouse-ear cress]


>gb:ATAC012395_1543463 Arabidopsis thaliana chromosome III BAC T1B9
           genomic sequence, complete sequence.
          Length = 481

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 177 MSRCFPFPPPGYENKARSEDADLL 106
           MSRCFPFPPPGYE K R+E +D L
Sbjct: 1   MSRCFPFPPPGYEKKIRTEASDSL 24



>pir|T04704|T04704 hypothetical protein F4B14.210 - Arabidopsis
           thaliana>gb:ATCHRIV84_1547554 Arabidopsis thaliana DNA
           chromosome 4, contig fragment No. 84.>gb:ATF4B14_1550628
           Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14
           (ESSA project).>gb:ATT19K4_1554815 Arabidopsis thaliana
           DNA chromosome 4, BAC clone T19K4 (ESSAII project).
          Length = 451

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -1

Query: 177 MSRCFPFPPPGY 142
           MSRCFPFPPPGY
Sbjct: 1   MSRCFPFPPPGY 12


  Database: nr-aa:  Non-redundant protein sequence database Release
  05-06-11
    Posted date:  Jun 11, 2005 12:23 PM
  Number of letters in database: 581,917,975
  Number of sequences in database:  1,806,583
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,072,739,254
Number of Sequences: 1806583
Number of extensions: 21391345
Number of successful extensions: 48798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48783
length of database: 581,917,975
effective HSP length: 127
effective length of database: 352,481,934
effective search space used: 93407712510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)