BLAST results

[Archaea] [Bacteria] [Eukaryota] [Viruses] [Metazoa] [green plants] [higher plants] [Others]
BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig12964
         (673 letters)

Database: nr-aa:  Non-redundant protein sequence database Release
05-06-11 
           1,806,583 sequences; 581,917,975 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir|A90084|A90084 hypothetical protein orf291 [imported] - Guill...    35   1.2     Guillardia theta


>pir|A90084|A90084 hypothetical protein orf291 [imported] -
           Guillardia theta nucleomorph>gb:AF165818_1773754
           Guillardia theta nucleomorph chromosome 1, complete
           sequence.
          Length = 291

 Score = 35.0 bits (79), Expect = 1.2
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
 Frame = -1

Query: 322 IYRH----NFSQKFSFKNESLFLDACFRKLNITLAN*INHFAIVI--SIFIHFSRFINQF 161
           IYR+    NF ++FSF   S  L   +  L++ L + + HF + +   +FIH   FIN  
Sbjct: 67  IYRYLKALNFFKEFSFNFSSRLL---YSLLHLKLVSKLKHFCLNLLEKLFIHSEFFINNH 123

Query: 160 FISY--TKLHF*KKL 122
           FI Y    L F KK+
Sbjct: 124 FIKYKILSLVFSKKI 138


  Database: nr-aa:  Non-redundant protein sequence database Release
  05-06-11
    Posted date:  Jun 11, 2005 12:23 PM
  Number of letters in database: 581,917,975
  Number of sequences in database:  1,806,583
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 667,596,702
Number of Sequences: 1806583
Number of extensions: 12906922
Number of successful extensions: 25165
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25158
length of database: 581,917,975
effective HSP length: 120
effective length of database: 365,128,015
effective search space used: 37608185545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)