BLAST results

[Archaea] [Bacteria] [Eukaryota] [Viruses] [Metazoa] [green plants] [higher plants] [Others]
BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig12399
         (681 letters)

Database: nr-aa:  Non-redundant protein sequence database Release
05-06-11 
           1,806,583 sequences; 581,917,975 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb:AX647657_1472456 Sequence 1849 from Patent EP1270724.               34   2.1     
gb:AE014186_938438 Plasmodium falciparum 3D7 chromosome 11 compl...    33   6.0     


>gb:AX647657_1472456 Sequence 1849 from Patent EP1270724.
          Length = 437

 Score = 34.3 bits (77), Expect = 2.1
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +3

Query: 273 HINS*HLSLTRHVYVFFISIGSSSHFLGISSHAYLYNIKVHTNNNHIYT 419
           HI++ ++ +  H++  ++ I + +H++ +  H Y + I V+T   HIYT
Sbjct: 155 HIHTIYVCIHTHIHTIYVCIHTYTHYICVCIHTYTHYICVYT---HIYT 200



>gb:AE014186_938438 Plasmodium falciparum 3D7 chromosome 11 complete
           sequence.>gb:AE014843_1229172 Plasmodium falciparum 3D7
           chromosome 11 section 8 of 8 of the complete sequence.
          Length = 3207

 Score = 32.7 bits (73), Expect = 6.0
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = +3

Query: 204 FPNINNPKTSATVSLLCLSFE---DNHINS*HLSLTRHVYVFFISIGSSSHFLGISSHAY 374
           FPNINN  ++      C +F    +N+IN   +S+ +H  +F     + +H   + +H+Y
Sbjct: 725 FPNINNMDSNIYNHTTCNNFNKNINNNIND--ISINKHNNIF----NNMNHLNHLDNHSY 778

Query: 375 ----LYNIKVHTNNNHIYTSKL 428
               LY   ++ N N +Y + +
Sbjct: 779 IQNNLYKNHMNVNTNILYNNPI 800


  Database: nr-aa:  Non-redundant protein sequence database Release
  05-06-11
    Posted date:  Jun 11, 2005 12:23 PM
  Number of letters in database: 581,917,975
  Number of sequences in database:  1,806,583
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 678,626,611
Number of Sequences: 1806583
Number of extensions: 13829522
Number of successful extensions: 22820
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22794
length of database: 581,917,975
effective HSP length: 120
effective length of database: 365,128,015
effective search space used: 38703569590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)