BLAST results

[Archaea] [Bacteria] [Eukaryota] [Viruses] [Metazoa] [green plants] [higher plants] [Others]
BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig4250
         (605 letters)

Database: nr-aa:  Non-redundant protein sequence database Release
05-06-11 
           1,806,583 sequences; 581,917,975 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb:AC005397_1532649 Arabidopsis thaliana chromosome 2 clone T3F1...    35   1.3     


>gb:AC005397_1532649 Arabidopsis thaliana chromosome 2 clone T3F17
           map CIC02E07, complete sequence.>gb:AY046011_1561503
           Arabidopsis thaliana unknown protein (At2g46260) mRNA,
           complete cds.>gb:AY079398_1568287 Arabidopsis thaliana
           unknown protein (At2g46260) mRNA, complete cds.
          Length = 561

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 24/79 (30%), Positives = 30/79 (37%)
 Frame = +3

Query: 162 LFDQRPIMDFDFSPSSHRGXXXXXXXXXXXXXXXXXXRTLRIEILPDLPGSKTGGESFSS 341
           LFD +  MD +FS     G                  R LRIEIL     S++  E  +S
Sbjct: 9   LFDPKTEMDSNFS---RHGSSSEGDFGFAFNDSNFSDRLLRIEILGGPSDSRSDAEGCTS 65

Query: 342 VVDWAXXXXXXXXXINKDN 398
           + DWA           KDN
Sbjct: 66  IADWARHRKRRREDNKKDN 84


  Database: nr-aa:  Non-redundant protein sequence database Release
  05-06-11
    Posted date:  Jun 11, 2005 12:23 PM
  Number of letters in database: 581,917,975
  Number of sequences in database:  1,806,583
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,170,114
Number of Sequences: 1806583
Number of extensions: 11318432
Number of successful extensions: 29400
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29396
length of database: 581,917,975
effective HSP length: 118
effective length of database: 368,741,181
effective search space used: 30605518023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)