BLAST results

[Archaea] [Bacteria] [Eukaryota] [Viruses] [Metazoa] [green plants] [higher plants] [Others]
Query= JMCP012A01 218 bp,

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gb|ABF95938.1|  Superoxide dismutase 1, putative, expressed           58.5    3e-09   Oryza sativa Japonica Group [Japonica rice]
gb|ABF95937.1|  Superoxide dismutase 1, putative, expressed           58.2    4e-09   Oryza sativa Japonica Group [Japonica rice]
gb|EEC75259.1|  hypothetical protein OsI_11574                        57.4    1e-08   Oryza sativa Indica Group [Indian rice]
gb|AAA33917.1|  superoxide dismutase                                  48.9    1e-05   Oryza sativa Japonica Group [Japonica rice]
ref|NP_001050118.1|  Os03g0351500                                     48.9    1e-05   



>gb|ABF95938.1| Superoxide dismutase 1, putative, expressed [Oryza sativa Japonica 
Group]
Length=230

 Score = 58.5 bits (140),  Expect(2) = 3e-09, Method: Composition-based stats.
 Identities = 29/29 (100%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
 Frame = -1

Query  88   EITLTMVKAVVVLGSSEIVKGTIHFVQEG  2
            EITLTMVKAVVVLGSSEIVKGTIHFVQEG
Sbjct  114  EITLTMVKAVVVLGSSEIVKGTIHFVQEG  142


 Score = 29.3 bits (64),  Expect(2) = 3e-09, Method: Compositional matrix adjust.
 Identities = 13/13 (100%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -3

Query  173  LPEAPDSKPAGVA  135
            LPEAPDSKPAGVA
Sbjct  86   LPEAPDSKPAGVA  98



>gb|ABF95937.1| Superoxide dismutase 1, putative, expressed [Oryza sativa Japonica 
Group]
 gb|EAZ26916.1| hypothetical protein OsJ_10843 [Oryza sativa Japonica Group]
Length=270

 Score = 58.2 bits (139),  Expect(2) = 4e-09, Method: Composition-based stats.
 Identities = 29/29 (100%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
 Frame = -1

Query  88   EITLTMVKAVVVLGSSEIVKGTIHFVQEG  2
            EITLTMVKAVVVLGSSEIVKGTIHFVQEG
Sbjct  114  EITLTMVKAVVVLGSSEIVKGTIHFVQEG  142


 Score = 29.3 bits (64),  Expect(2) = 4e-09, Method: Compositional matrix adjust.
 Identities = 13/13 (100%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -3

Query  173  LPEAPDSKPAGVA  135
            LPEAPDSKPAGVA
Sbjct  86   LPEAPDSKPAGVA  98



>gb|EEC75259.1| hypothetical protein OsI_11574 [Oryza sativa Indica Group]
Length=187

 Score = 57.4 bits (137),  Expect = 1e-08, Method: Composition-based stats.
 Identities = 28/28 (100%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = -1

Query  85  ITLTMVKAVVVLGSSEIVKGTIHFVQEG  2
           ITLTMVKAVVVLGSSEIVKGTIHFVQEG
Sbjct  16  ITLTMVKAVVVLGSSEIVKGTIHFVQEG  43



>gb|AAA33917.1| superoxide dismutase [Oryza sativa Japonica Group]
Length=152

 Score = 48.9 bits (115),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 24/24 (100%), Positives = 24/24 (100%), Gaps = 0/24 (0%)
 Frame = -1

Query  73  MVKAVVVLGSSEIVKGTIHFVQEG  2
           MVKAVVVLGSSEIVKGTIHFVQEG
Sbjct  1   MVKAVVVLGSSEIVKGTIHFVQEG  24



>ref|NP_001050118.1| Os03g0351500 [Oryza sativa Japonica Group]
 sp|Q0DRV6.1|SODC1_ORYSJ RecName: Full=Superoxide dismutase [Cu-Zn] 1 [Oryza sativa Japonica 
Group]
 sp|A2XGP6.2|SODC1_ORYSI RecName: Full=Superoxide dismutase [Cu-Zn] 1 [Oryza sativa Indica 
Group]
 dbj|BAA00799.1| copper/zinc-superoxide dismutase [Oryza sativa Japonica Group]
 gb|AAC14464.1| cytosolic copper/zinc-superoxide dismutase [Oryza sativa Japonica 
Group]
 gb|AAY56345.1| cytoplasmic copper/zinc-superoxide dismutase [Oryza sativa Indica 
Group]
 dbj|BAF12032.1| Os03g0351500 [Oryza sativa Japonica Group]
 prf||2111424A Cu/Zn superoxide dismutase
Length=152

 Score = 48.9 bits (115),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 24/24 (100%), Positives = 24/24 (100%), Gaps = 0/24 (0%)
 Frame = -1

Query  73  MVKAVVVLGSSEIVKGTIHFVQEG  2
           MVKAVVVLGSSEIVKGTIHFVQEG
Sbjct  1   MVKAVVVLGSSEIVKGTIHFVQEG  24



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556818267195